JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAP1GAP2_chr17_2791438_3042741	1/0	a0001	730	157	58	27	49	5	17	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/1	a0002	730	56	5	8	21	1	20	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	a0003	730	4	3	1	0	0	0	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP2_chr17_2791438_3042741	0/0	a0004	730	1	0	0	0	0	1	copy fasta	RAP1GAP2	chr17	2791438	3042741
RAP1GAP_chr1_21591221_21674357	0/0	a0000	0	2	0	2	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	1/0	a0001	663	208	52	51	75	6	23	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/1	a0002	663	154	34	25	71	8	15	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	a0003	663	4	4	0	0	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	a0004	663	1	0	0	1	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	a0005	663	1	0	0	0	1	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	a0006	663	1	0	0	1	0	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GAP_chr1_21591221_21674357	0/0	a0007	663	1	0	0	0	1	0	copy fasta	RAP1GAP	chr1	21591221	21674357
RAP1GDS1_chr4_98256384_98448858	1/1	a0001	607	241	84	53	76	6	20	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP1GDS1_chr4_98256384_98448858	0/0	a0002	607	1	0	1	0	0	0	copy fasta	RAP1GDS1	chr4	98256384	98448858
RAP2A_chr13_97429169_97474128	1/1	a0001	183	344	84	60	152	10	36	copy fasta	RAP2A	chr13	97429169	97474128
RAP2B_chr3_153157226_153175627	1/1	a0001	183	430	96	76	204	12	40	copy fasta	RAP2B	chr3	153157226	153175627
RAP2C_chrX_132198025_132224447	1/1	a0001	183	231	68	36	90	9	26	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	a0002	183	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	a0003	66	1	0	1	0	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	a0004	66	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAP2C_chrX_132198025_132224447	0/0	a0005	178	1	0	0	1	0	0	copy fasta	RAP2C	chrX	132198025	132224447
RAPGEF1_chr9_131571775_131745076	1/1	a0001	1263	360	82	63	155	16	42	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	a0002	1263	2	2	0	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	a0003	1263	1	0	1	0	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	a0004	1263	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	a0005	1263	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	a0006	1263	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	a0007	1263	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF1_chr9_131571775_131745076	0/0	a0008	1263	1	0	0	1	0	0	copy fasta	RAPGEF1	chr9	131571775	131745076
RAPGEF2_chr4_159098079_159365173	1/1	a0001	1660	193	88	48	29	8	18	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF2_chr4_159098079_159365173	0/0	a0002	1660	1	0	0	1	0	0	copy fasta	RAPGEF2	chr4	159098079	159365173
RAPGEF3_chr12_47729363_47763880	0/0	a0001	923	278	48	48	139	11	32	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0002	923	83	17	15	34	5	12	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/1	a0003	923	36	12	10	7	2	4	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0004	923	8	7	1	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0005	923	4	0	0	4	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0006	925	3	3	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0007	923	2	2	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0008	923	2	2	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0009	923	2	0	0	2	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0010	923	2	0	0	2	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0011	923	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0012	923	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0013	923	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0014	923	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0015	923	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0016	923	1	0	0	1	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	1/0	a0017	923	1	0	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0018	923	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF3_chr12_47729363_47763880	0/0	a0019	923	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880