Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ABHD15_chr17_29555547_29572037	0/0	a0006	468	1	0	0	1	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD15_chr17_29555547_29572037	0/0	a0007	468	1	0	0	1	0	0	copy fasta	ABHD15	chr17	29555547	29572037
ABHD16A_chr6_31681955_31708324	0/1	a0001	558	413	91	80	177	18	46	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	a0002	558	1	0	0	1	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	a0003	558	1	1	0	0	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	a0004	551	1	0	0	1	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16A_chr6_31681955_31708324	0/0	a0005	558	1	0	0	1	0	0	copy fasta	ABHD16A	chr6	31681955	31708324
ABHD16B_chr20_63856498_63867988	1/1	a0001	469	339	83	72	128	15	39	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	a0002	469	27	0	3	19	2	3	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	a0003	460	16	3	3	10	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	a0004	469	4	4	0	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	a0005	469	2	1	1	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	a0006	460	2	0	0	2	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	a0007	469	1	0	0	1	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	a0008	469	1	0	1	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	a0009	469	1	0	0	1	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	a0010	469	1	1	0	0	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	a0011	469	1	0	0	0	0	1	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	a0012	469	1	0	0	0	1	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	a0013	469	1	0	0	1	0	0	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD16B_chr20_63856498_63867988	0/0	a0014	125	1	0	0	0	0	1	copy fasta	ABHD16B	chr20	63856498	63867988
ABHD17A_chr19_1871810_1890496	1/1	a0001	310	408	87	74	185	14	46	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	a0002	310	5	5	0	0	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	a0003	310	1	1	0	0	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	a0004	310	1	1	0	0	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17A_chr19_1871810_1890496	0/0	a0005	310	1	0	0	1	0	0	copy fasta	ABHD17A	chr19	1871810	1890496
ABHD17B_chr9_71860152_71916193	1/1	a0001	288	186	62	46	50	12	14	copy fasta	ABHD17B	chr9	71860152	71916193
ABHD17C_chr15_80690310_80760621	1/1	a0001	329	360	94	60	144	14	46	copy fasta	ABHD17C	chr15	80690310	80760621
ABHD18_chr4_127960406_128044953	1/1	a0001	464	268	81	43	100	12	30	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	a0002	464	65	0	7	58	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	a0003	464	6	6	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	a0004	464	3	0	0	3	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	a0005	464	1	1	0	0	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD18_chr4_127960406_128044953	0/0	a0006	464	1	0	0	1	0	0	copy fasta	ABHD18	chr4	127960406	128044953
ABHD1_chr2_27118815_27135812	1/1	a0001	405	292	53	56	136	16	29	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	a0002	405	91	30	15	37	2	7	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	a0003	405	5	5	0	0	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	a0004	405	4	4	0	0	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	a0005	405	1	0	0	1	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	a0006	405	1	0	1	0	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	a0007	405	1	0	1	0	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	a0008	405	1	0	0	1	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	a0009	405	1	0	1	0	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	a0010	405	1	0	0	1	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	a0011	405	1	0	0	1	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD1_chr2_27118815_27135812	0/0	a0012	405	1	0	0	1	0	0	copy fasta	ABHD1	chr2	27118815	27135812
ABHD2_chr15_89083456_89207355	1/1	a0001	425	233	90	38	65	8	30	copy fasta	ABHD2	chr15	89083456	89207355
ABHD2_chr15_89083456_89207355	0/0	a0002	425	1	0	0	1	0	0	copy fasta	ABHD2	chr15	89083456	89207355
ABHD3_chr18_21645901_21709774	1/1	a0001	409	301	83	55	115	10	36	copy fasta	ABHD3	chr18	21645901	21709774
ABHD3_chr18_21645901_21709774	0/0	a0002	409	1	1	0	0	0	0	copy fasta	ABHD3	chr18	21645901	21709774