JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATF7IP_chr12_14360682_14507930	0/0	a0007	1270	3	0	0	0	3	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	a0008	1270	2	2	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	a0009	1270	2	0	2	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	a0010	1270	2	2	0	0	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	a0011	1265	1	0	0	1	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	a0012	1270	1	0	0	1	0	0	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	a0013	1270	1	0	0	0	0	1	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7IP_chr12_14360682_14507930	0/0	a0014	1270	1	0	0	0	0	1	copy fasta	ATF7IP	chr12	14360682	14507930
ATF7_chr12_53507054_53631382	1/1	a0001	483	329	83	66	124	12	42	copy fasta	ATF7	chr12	53507054	53631382
ATF7_chr12_53507054_53631382	0/0	a0002	483	1	1	0	0	0	0	copy fasta	ATF7	chr12	53507054	53631382
ATG101_chr12_52064978_52082495	1/1	a0001	218	366	81	58	176	10	39	copy fasta	ATG101	chr12	52064978	52082495
ATG101_chr12_52064978_52082495	0/0	a0002	214	28	13	6	0	4	5	copy fasta	ATG101	chr12	52064978	52082495
ATG10_chr5_81967023_82261133	1/1	a0001	220	96	60	18	0	6	10	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	a0002	220	69	17	17	18	7	10	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	a0003	220	32	7	5	10	0	10	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	a0004	220	16	1	5	7	0	3	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	a0005	220	9	0	3	3	1	2	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	a0006	220	2	2	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	a0007	220	1	0	0	0	0	1	copy fasta	ATG10	chr5	81967023	82261133
ATG10_chr5_81967023_82261133	0/0	a0008	220	1	1	0	0	0	0	copy fasta	ATG10	chr5	81967023	82261133
ATG12_chr5_115823200_115846565	1/1	a0001	140	396	91	73	171	16	43	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	a0002	140	4	0	2	1	0	1	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	a0003	140	1	1	0	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG12_chr5_115823200_115846565	0/0	a0004	140	1	0	1	0	0	0	copy fasta	ATG12	chr5	115823200	115846565
ATG13_chr11_46612553_46679518	1/1	a0001	550	216	85	46	54	10	19	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	a0002	550	1	0	0	0	0	1	copy fasta	ATG13	chr11	46612553	46679518
ATG13_chr11_46612553_46679518	0/0	a0003	550	1	1	0	0	0	0	copy fasta	ATG13	chr11	46612553	46679518
ATG14_chr14_55361391_55416830	1/1	a0001	492	342	75	55	162	14	34	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	a0002	492	15	12	3	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	a0003	492	3	0	0	0	0	3	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	a0004	492	3	0	0	3	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	a0005	492	1	0	0	1	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	a0006	492	1	0	0	0	0	1	copy fasta	ATG14	chr14	55361391	55416830
ATG14_chr14_55361391_55416830	0/0	a0007	492	1	1	0	0	0	0	copy fasta	ATG14	chr14	55361391	55416830
ATG16L1_chr2_233246673_233300669	1/1	a0001	607	228	61	30	105	8	22	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	a0002	607	118	33	24	42	6	13	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	a0003	607	6	0	0	6	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	a0004	607	1	0	0	0	0	1	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L1_chr2_233246673_233300669	0/0	a0005	607	1	0	0	1	0	0	copy fasta	ATG16L1	chr2	233246673	233300669
ATG16L2_chr11_72809411_72834635	1/1	a0001	619	410	87	81	176	18	46	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	a0002	619	20	0	0	20	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	a0003	619	6	6	0	0	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	a0004	625	1	0	1	0	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	a0005	619	1	1	0	0	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	a0006	619	1	0	0	1	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG16L2_chr11_72809411_72834635	0/0	a0007	619	1	0	0	1	0	0	copy fasta	ATG16L2	chr11	72809411	72834635
ATG2A_chr11_64889546_64922209	0/1	a0001	1938	283	45	56	132	12	37	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0002	1938	11	11	0	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0003	1938	9	7	2	0	0	0	copy fasta	ATG2A	chr11	64889546	64922209
ATG2A_chr11_64889546_64922209	0/0	a0004	1938	8	0	0	8	0	0	copy fasta	ATG2A	chr11	64889546	64922209