JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAPGEF3_chr12_47729363_47763880	0/0	a0020	923	1	1	0	0	0	0	copy fasta	RAPGEF3	chr12	47729363	47763880
RAPGEF4_chr2_172730845_173057893	1/1	a0001	1011	168	48	29	45	6	38	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	a0002	1011	3	3	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	a0003	1011	2	2	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	a0004	1011	2	0	0	1	0	1	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	a0005	1011	1	0	1	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	a0006	1011	1	0	0	0	0	1	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF4_chr2_172730845_173057893	0/0	a0007	1011	1	1	0	0	0	0	copy fasta	RAPGEF4	chr2	172730845	173057893
RAPGEF5_chr7_22113236_22362154	1/1	a0001	883	312	81	48	139	10	32	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	a0002	883	9	4	0	1	2	2	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	a0003	883	2	2	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	a0004	883	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	a0005	883	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	a0006	883	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	a0007	883	1	0	0	0	0	1	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	a0008	883	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	a0009	883	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF5_chr7_22113236_22362154	0/0	a0010	883	1	1	0	0	0	0	copy fasta	RAPGEF5	chr7	22113236	22362154
RAPGEF6_chr5_131418921_131640229	0/1	a0001	1601	294	77	60	131	2	23	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	1/0	a0002	1601	22	3	3	11	2	2	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	a0003	1601	3	3	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	a0004	1601	1	0	0	0	0	1	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	a0005	1601	1	0	0	1	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	a0006	1601	1	0	1	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	a0007	1601	1	0	0	1	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEF6_chr5_131418921_131640229	0/0	a0008	1601	1	1	0	0	0	0	copy fasta	RAPGEF6	chr5	131418921	131640229
RAPGEFL1_chr17_40172470_40200650	1/1	a0001	662	306	87	62	117	10	28	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	a0002	662	5	5	0	0	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	a0003	662	2	0	0	2	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	a0004	662	1	0	0	1	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	a0005	662	1	0	0	1	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPGEFL1_chr17_40172470_40200650	0/0	a0006	89	1	0	0	1	0	0	copy fasta	RAPGEFL1	chr17	40172470	40200650
RAPH1_chr2_203428682_203540301	1/1	a0001	1250	244	67	46	97	11	21	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	a0002	684	35	9	4	18	1	3	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	a0003	921	4	1	1	2	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	a0004	1250	2	0	0	2	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	a0005	1250	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	a0006	684	1	0	1	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	a0007	1250	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	a0008	1250	1	1	0	0	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPH1_chr2_203428682_203540301	0/0	a0009	1250	1	0	0	1	0	0	copy fasta	RAPH1	chr2	203428682	203540301
RAPSN_chr11_47432764_47454136	1/0	a0001	412	378	82	58	183	15	39	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/1	a0002	412	15	1	8	1	1	3	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	a0003	412	5	5	0	0	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	a0004	412	2	0	2	0	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	a0005	412	1	0	0	1	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RAPSN_chr11_47432764_47454136	0/0	a0006	412	1	0	0	1	0	0	copy fasta	RAPSN	chr11	47432764	47454136
RARA_chr17_40304180_40362643	1/1	a0001	462	269	77	52	99	10	29	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	a0002	105	14	6	4	3	0	1	copy fasta	RARA	chr17	40304180	40362643
RARA_chr17_40304180_40362643	0/0	a0003	462	3	3	0	0	0	0	copy fasta	RARA	chr17	40304180	40362643