JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RARB_chr3_25423263_25602932	1/1	a0001	448	290	84	64	108	6	26	copy fasta	RARB	chr3	25423263	25602932
RARG_chr12_53205569_53237209	0/0	a0001	454	330	90	57	148	4	31	copy fasta	RARG	chr12	53205569	53237209
RARG_chr12_53205569_53237209	0/0	a0002	454	26	6	7	0	0	13	copy fasta	RARG	chr12	53205569	53237209
RARRES1_chr3_158691892_158737457	1/1	a0001	294	277	29	48	154	11	33	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	a0002	294	68	40	14	2	5	7	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	a0003	294	18	16	2	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	a0004	294	6	6	0	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	a0005	294	5	3	2	0	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	a0006	138	3	0	0	3	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	a0007	294	1	0	0	0	1	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	a0008	294	1	0	0	1	0	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES1_chr3_158691892_158737457	0/0	a0009	294	1	0	0	0	1	0	copy fasta	RARRES1	chr3	158691892	158737457
RARRES2_chr7_150333329_150346629	1/1	a0001	163	398	92	55	195	12	42	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	a0002	163	3	0	0	3	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	a0003	163	1	0	0	1	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	a0004	163	1	0	1	0	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARRES2_chr7_150333329_150346629	0/0	a0005	163	1	0	0	1	0	0	copy fasta	RARRES2	chr7	150333329	150346629
RARS1_chr5_168481471_168524301	0/0	a0001	660	273	77	46	124	3	23	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	1/1	a0002	660	82	18	15	23	5	19	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	a0003	660	34	1	9	18	2	4	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	a0004	660	2	0	2	0	0	0	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	a0005	660	2	0	0	2	0	0	copy fasta	RARS1	chr5	168481471	168524301
RARS1_chr5_168481471_168524301	0/0	a0006	627	1	0	0	1	0	0	copy fasta	RARS1	chr5	168481471	168524301
RARS2_chr6_87508938_87594987	1/0	a0001	578	303	68	63	125	15	31	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/1	a0002	578	47	15	7	19	0	5	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	a0003	578	22	0	0	21	0	1	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	a0004	578	3	3	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	a0005	578	3	1	0	0	0	2	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	a0006	578	1	0	0	1	0	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	a0007	578	1	0	0	0	1	0	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	a0008	578	1	0	0	0	0	1	copy fasta	RARS2	chr6	87508938	87594987
RARS2_chr6_87508938_87594987	0/0	a0009	578	1	1	0	0	0	0	copy fasta	RARS2	chr6	87508938	87594987
RASA1_chr5_87262883_87396916	1/1	a0001	1047	272	72	48	109	9	32	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	a0002	1047	3	0	2	0	1	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	a0003	1047	2	0	0	2	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	a0004	1047	2	2	0	0	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	a0005	1047	1	0	0	1	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	a0006	1047	1	0	0	1	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA1_chr5_87262883_87396916	0/0	a0007	1047	1	0	0	1	0	0	copy fasta	RASA1	chr5	87262883	87396916
RASA2_chr3_141482027_141620344	1/1	a0001	849	254	54	50	110	12	26	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	a0002	849	24	22	2	0	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	a0003	146	1	0	0	1	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA2_chr3_141482027_141620344	0/0	a0004	849	1	0	0	1	0	0	copy fasta	RASA2	chr3	141482027	141620344
RASA3_chr13_113972783_114137623	1/0	a0001	834	62	19	22	13	0	7	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	a0002	834	3	3	0	0	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	a0003	834	1	0	0	0	0	1	copy fasta	RASA3	chr13	113972783	114137623
RASA3_chr13_113972783_114137623	0/0	a0004	834	1	0	0	1	0	0	copy fasta	RASA3	chr13	113972783	114137623
RASA4B_chr7_102474976_102522777	0/0	a0001	803	19	3	5	8	1	2	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	0/0	a0002	803	9	4	1	3	1	0	copy fasta	RASA4B	chr7	102474976	102522777
RASA4B_chr7_102474976_102522777	1/0	a0003	803	7	2	2	1	0	1	copy fasta	RASA4B	chr7	102474976	102522777