JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RASA4_chr7_102574646_102621756	0/0	a0040	803	1	0	0	1	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	a0041	757	1	0	0	1	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	a0042	757	1	0	0	1	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	a0043	757	1	0	0	0	1	0	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	a0044	803	1	0	0	0	0	1	copy fasta	RASA4	chr7	102574646	102621756
RASA4_chr7_102574646_102621756	0/0	a0045	803	1	1	0	0	0	0	copy fasta	RASA4	chr7	102574646	102621756
RASAL1_chr12_113094278_113140761	0/1	a0001	805	222	53	47	83	10	28	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	1/0	a0002	805	83	25	6	41	3	7	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	a0003	805	1	0	0	0	1	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	a0004	805	1	1	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	a0005	805	1	1	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	a0006	805	1	1	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	a0007	805	1	1	0	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	a0008	805	1	0	0	1	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	a0009	691	1	0	0	1	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	a0010	805	1	0	1	0	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	a0011	805	1	0	0	1	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	a0012	805	1	0	0	1	0	0	copy fasta	RASAL1	chr12	113094278	113140761
RASAL1_chr12_113094278_113140761	0/0	a0013	805	1	0	0	0	0	1	copy fasta	RASAL1	chr12	113094278	113140761
RASAL2_chr1_178089104_178483850	1/1	a0001	1280	172	75	37	42	4	12	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	a0002	1280	4	0	0	4	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	a0003	1280	1	0	1	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	a0004	1280	1	0	0	1	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	a0005	1280	1	0	0	1	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL2_chr1_178089104_178483850	0/0	a0006	1280	1	1	0	0	0	0	copy fasta	RASAL2	chr1	178089104	178483850
RASAL3_chr19_15446624_15469544	1/1	a0001	1011	328	77	64	134	16	35	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0002	1011	10	3	0	0	1	6	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0003	481	8	2	2	4	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0004	1011	8	0	2	6	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0005	1011	7	0	6	0	1	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0006	1011	4	4	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0007	1011	3	0	0	3	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0008	1011	3	2	1	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0009	1011	3	0	0	3	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0010	1011	2	2	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0011	1011	1	0	1	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0012	1011	1	1	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0013	1011	1	0	0	1	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0014	1011	1	0	1	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0015	1011	1	1	0	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0016	1011	1	0	0	0	0	1	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0017	1011	1	0	1	0	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASAL3_chr19_15446624_15469544	0/0	a0018	1011	1	0	0	1	0	0	copy fasta	RASAL3	chr19	15446624	15469544
RASD1_chr17_17489437_17501395	1/1	a0001	281	428	93	82	191	16	44	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	a0002	279	3	3	0	0	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	a0003	281	1	1	0	0	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	a0004	285	1	0	0	1	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD1_chr17_17489437_17501395	0/0	a0005	281	1	1	0	0	0	0	copy fasta	RASD1	chr17	17489437	17501395
RASD2_chr22_35535831_35558999	1/1	a0001	266	407	87	79	171	18	50	copy fasta	RASD2	chr22	35535831	35558999
RASD2_chr22_35535831_35558999	0/0	a0002	266	2	1	1	0	0	0	copy fasta	RASD2	chr22	35535831	35558999