JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RASD2_chr22_35535831_35558999	0/0	a0003	266	1	0	0	1	0	0	copy fasta	RASD2	chr22	35535831	35558999
RASEF_chr9_82974590_83068142	0/1	a0001	740	172	37	28	85	5	16	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	1/0	a0002	740	146	41	27	58	5	14	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	a0003	740	6	6	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	a0004	740	2	2	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	a0005	740	2	2	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	a0006	740	2	2	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	a0007	740	1	0	1	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	a0008	740	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	a0009	740	1	1	0	0	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASEF_chr9_82974590_83068142	0/0	a0010	740	1	0	0	1	0	0	copy fasta	RASEF	chr9	82974590	83068142
RASGEF1A_chr10_43189535_43272065	1/1	a0001	481	316	89	68	109	14	34	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	a0002	481	33	0	0	29	0	4	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1A_chr10_43189535_43272065	0/0	a0003	481	1	1	0	0	0	0	copy fasta	RASGEF1A	chr10	43189535	43272065
RASGEF1B_chr4_81421393_81476907	1/1	a0001	473	313	88	60	108	16	39	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	a0002	473	1	1	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	a0003	473	1	1	0	0	0	0	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1B_chr4_81421393_81476907	0/0	a0004	473	1	0	0	0	0	1	copy fasta	RASGEF1B	chr4	81421393	81476907
RASGEF1C_chr5_180095795_180214211	1/1	a0001	466	369	96	77	130	16	48	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGEF1C_chr5_180095795_180214211	0/0	a0002	466	1	0	1	0	0	0	copy fasta	RASGEF1C	chr5	180095795	180214211
RASGRF1_chr15_78954906_79095780	1/1	a0001	1257	310	85	60	113	13	37	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	a0002	1257	1	0	0	0	0	1	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	a0003	1257	1	1	0	0	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	a0004	1249	1	0	0	1	0	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF1_chr15_78954906_79095780	0/0	a0005	1257	1	0	0	0	1	0	copy fasta	RASGRF1	chr15	78954906	79095780
RASGRF2_chr5_80955363_81235162	1/0	a0001	1237	254	83	47	82	11	30	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/1	a0002	1237	10	1	3	1	1	3	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	a0003	1237	7	5	1	0	0	1	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	a0004	1237	2	2	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	a0005	1237	1	0	0	1	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	a0006	1237	1	0	1	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRF2_chr5_80955363_81235162	0/0	a0007	1237	1	1	0	0	0	0	copy fasta	RASGRF2	chr5	80955363	81235162
RASGRP1_chr15_38483103_38569814	1/1	a0001	797	336	89	60	138	16	31	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	a0002	797	6	6	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	a0003	797	3	0	0	3	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	a0004	797	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	a0005	797	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	a0006	797	1	1	0	0	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	a0007	797	1	0	0	0	0	1	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP1_chr15_38483103_38569814	0/0	a0008	797	1	0	0	1	0	0	copy fasta	RASGRP1	chr15	38483103	38569814
RASGRP2_chr11_64721911_64749142	1/1	a0001	609	293	88	40	121	10	32	copy fasta	RASGRP2	chr11	64721911	64749142
RASGRP2_chr11_64721911_64749142	0/0	a0002	609	1	0	0	1	0	0	copy fasta	RASGRP2	chr11	64721911	64749142
RASGRP3_chr2_33471649_33569731	1/1	a0001	690	359	90	46	184	9	28	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	a0002	690	3	0	0	0	2	1	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	a0003	690	2	2	0	0	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	a0004	690	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	a0005	690	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	a0006	690	1	0	0	0	1	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	a0007	690	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP3_chr2_33471649_33569731	0/0	a0008	690	1	0	0	1	0	0	copy fasta	RASGRP3	chr2	33471649	33569731