JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RASGRP3_chr2_33471649_33569731	0/0	a0009	690	1	0	0	0	0	1	copy fasta	RASGRP3	chr2	33471649	33569731
RASGRP4_chr19_38404058_38431219	1/1	a0001	673	183	29	42	90	6	14	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0002	673	176	44	26	72	4	30	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0003	673	16	0	0	16	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0004	673	13	11	1	0	1	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0005	673	7	3	2	0	0	2	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0006	673	2	2	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0007	673	2	0	0	2	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0008	673	2	0	0	2	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0009	673	2	0	2	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0010	673	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0011	673	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0012	673	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0013	673	1	0	0	1	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0014	673	1	0	1	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0015	673	1	0	0	0	1	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASGRP4_chr19_38404058_38431219	0/0	a0016	673	1	1	0	0	0	0	copy fasta	RASGRP4	chr19	38404058	38431219
RASIP1_chr19_48715585_48745610	1/1	a0001	963	308	80	42	143	5	36	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	a0002	963	52	11	17	11	5	8	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	a0003	963	1	0	0	1	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	a0004	963	1	0	1	0	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	a0005	963	1	0	0	1	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASIP1_chr19_48715585_48745610	0/0	a0006	963	1	1	0	0	0	0	copy fasta	RASIP1	chr19	48715585	48745610
RASL10A_chr22_29307933_29320697	1/1	a0001	203	430	94	72	198	16	48	copy fasta	RASL10A	chr22	29307933	29320697
RASL10B_chr17_35726639_35748521	1/1	a0001	203	444	98	78	209	16	41	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	a0002	203	1	0	0	1	0	0	copy fasta	RASL10B	chr17	35726639	35748521
RASL10B_chr17_35726639_35748521	0/0	a0003	203	1	0	0	0	0	1	copy fasta	RASL10B	chr17	35726639	35748521
RASL11A_chr13_27265830_27280192	1/1	a0001	242	404	98	79	171	14	40	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	a0002	242	1	0	0	1	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	a0003	242	1	0	1	0	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	a0004	242	1	0	0	1	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11A_chr13_27265830_27280192	0/0	a0005	242	1	0	0	1	0	0	copy fasta	RASL11A	chr13	27265830	27280192
RASL11B_chr4_52857317_52871835	1/1	a0001	248	425	91	76	194	18	44	copy fasta	RASL11B	chr4	52857317	52871835
RASL11B_chr4_52857317_52871835	0/0	a0002	248	3	3	0	0	0	0	copy fasta	RASL11B	chr4	52857317	52871835
RASL12_chr15_65048337_65072991	1/1	a0001	266	336	95	71	124	18	26	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	a0002	266	1	0	1	0	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASL12_chr15_65048337_65072991	0/0	a0003	266	1	1	0	0	0	0	copy fasta	RASL12	chr15	65048337	65072991
RASSF10_chr11_13004316_13017119	1/1	a0001	507	374	87	59	179	17	30	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	a0002	507	39	0	13	17	0	9	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	a0003	507	4	2	1	0	1	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	a0004	507	4	4	0	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	a0005	507	1	0	0	0	0	1	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	a0006	507	1	0	1	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	a0007	507	1	0	1	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	a0008	507	1	1	0	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF10_chr11_13004316_13017119	0/0	a0009	507	1	0	1	0	0	0	copy fasta	RASSF10	chr11	13004316	13017119
RASSF1_chr3_50324788_50345836	1/0	a0001	340	234	64	51	73	10	35	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	a0002	340	99	14	9	75	0	1	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/1	a0003	340	35	1	7	16	4	6	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	a0004	340	11	0	11	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836