JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RASSF1_chr3_50324788_50345836	0/0	a0005	340	4	4	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	a0006	340	3	3	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	a0007	340	1	1	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	a0008	340	1	1	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	a0009	340	1	1	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF1_chr3_50324788_50345836	0/0	a0010	340	1	1	0	0	0	0	copy fasta	RASSF1	chr3	50324788	50345836
RASSF2_chr20_4775023_4828608	1/1	a0001	326	426	93	73	192	18	48	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	a0002	326	2	2	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	a0003	326	1	1	0	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF2_chr20_4775023_4828608	0/0	a0004	326	1	0	1	0	0	0	copy fasta	RASSF2	chr20	4775023	4828608
RASSF3_chr12_64605495_64702564	1/1	a0001	238	360	78	72	154	16	38	copy fasta	RASSF3	chr12	64605495	64702564
RASSF3_chr12_64605495_64702564	0/0	a0002	238	10	10	0	0	0	0	copy fasta	RASSF3	chr12	64605495	64702564
RASSF4_chr10_44954802_45000891	1/1	a0001	321	264	52	46	126	10	28	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	a0002	321	109	28	12	60	0	9	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	a0003	321	5	3	2	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	a0004	321	4	3	1	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	a0005	321	3	3	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	a0006	321	2	1	1	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	a0007	321	2	2	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	a0008	321	1	0	0	0	0	1	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	a0009	321	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	a0010	321	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	a0011	321	1	1	0	0	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	a0012	321	1	0	0	0	0	1	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	a0013	169	1	0	0	1	0	0	copy fasta	RASSF4	chr10	44954802	45000891
RASSF4_chr10_44954802_45000891	0/0	a0014	321	1	0	0	0	0	1	copy fasta	RASSF4	chr10	44954802	45000891
RASSF5_chr1_206502531_206594448	1/1	a0001	418	328	87	63	134	10	32	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	a0002	418	8	8	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	a0003	418	4	0	0	4	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	a0004	418	2	0	0	0	0	2	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	a0005	418	1	0	0	1	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	a0006	418	1	0	1	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	a0007	418	1	0	0	1	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF5_chr1_206502531_206594448	0/0	a0008	418	1	1	0	0	0	0	copy fasta	RASSF5	chr1	206502531	206594448
RASSF6_chr4_73566550_73625436	1/0	a0001	337	227	50	29	115	10	22	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/1	a0002	337	102	26	36	26	3	10	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	a0003	337	3	3	0	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	a0004	337	3	1	1	0	1	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	a0005	337	2	0	2	0	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF6_chr4_73566550_73625436	0/0	a0006	337	1	0	0	1	0	0	copy fasta	RASSF6	chr4	73566550	73625436
RASSF7_chr11_555970_569025	0/1	a0001	373	275	93	60	72	16	33	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0002	373	56	0	7	44	1	4	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0003	373	48	0	9	31	1	7	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0004	373	3	2	1	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0005	373	1	1	0	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0006	373	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0007	373	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0008	373	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0009	373	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0010	373	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025