JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RASSF7_chr11_555970_569025	0/0	a0011	373	1	0	0	0	0	1	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0012	373	1	1	0	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0013	373	1	0	1	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0014	281	1	0	1	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0015	373	1	0	1	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0016	354	1	1	0	0	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0017	373	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0018	373	1	0	0	0	0	1	copy fasta	RASSF7	chr11	555970	569025
RASSF7_chr11_555970_569025	0/0	a0019	373	1	0	0	1	0	0	copy fasta	RASSF7	chr11	555970	569025
RASSF8_chr12_25953682_26077869	1/1	a0001	419	389	90	60	189	12	36	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	a0002	419	3	0	0	3	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	a0003	419	2	2	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	a0004	419	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF8_chr12_25953682_26077869	0/0	a0005	419	1	1	0	0	0	0	copy fasta	RASSF8	chr12	25953682	26077869
RASSF9_chr12_85795703_85841409	1/1	a0001	435	299	79	58	106	14	40	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	a0002	435	38	4	14	18	2	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	a0003	435	3	3	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	a0004	435	2	2	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	a0005	435	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RASSF9_chr12_85795703_85841409	0/0	a0006	435	1	1	0	0	0	0	copy fasta	RASSF9	chr12	85795703	85841409
RAVER1_chr19_10311212_10338529	1/1	a0001	739	421	84	81	194	18	42	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0002	739	2	0	0	2	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0003	739	2	0	1	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0004	739	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0005	739	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0006	739	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0007	739	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0008	739	1	0	1	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0009	739	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0010	739	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0011	739	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0012	739	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0013	739	1	1	0	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0014	739	1	0	1	0	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0015	738	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER1_chr19_10311212_10338529	0/0	a0016	739	1	0	0	1	0	0	copy fasta	RAVER1	chr19	10311212	10338529
RAVER2_chr1_64740075_64838232	0/0	a0000	0	1	0	1	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	1/1	a0001	691	353	88	60	155	14	34	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	a0002	691	5	4	1	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	a0003	691	2	0	2	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	a0004	691	1	1	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	a0005	691	1	1	0	0	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAVER2_chr1_64740075_64838232	0/0	a0006	691	1	0	0	1	0	0	copy fasta	RAVER2	chr1	64740075	64838232
RAX2_chr19_3764089_3777228	0/0	a0000	0	18	3	2	9	0	4	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	1/0	a0001	184	413	97	75	178	18	44	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/1	a0002	184	2	0	1	0	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	a0003	184	1	0	0	1	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	a0004	184	1	0	0	1	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX2_chr19_3764089_3777228	0/0	a0005	184	1	0	0	1	0	0	copy fasta	RAX2	chr19	3764089	3777228
RAX_chr18_59262038_59278454	1/1	a0001	346	384	78	65	187	14	38	copy fasta	RAX	chr18	59262038	59278454