JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RAX_chr18_59262038_59278454	0/0	a0002	346	96	19	17	44	4	12	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	a0003	346	2	0	0	2	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	a0004	346	1	1	0	0	0	0	copy fasta	RAX	chr18	59262038	59278454
RAX_chr18_59262038_59278454	0/0	a0005	346	1	0	0	1	0	0	copy fasta	RAX	chr18	59262038	59278454
RB1CC1_chr8_52617458_52719435	0/1	a0001	1594	162	19	39	74	6	23	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	1/0	a0002	1594	135	62	21	30	4	17	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	a0003	1594	2	0	0	2	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	a0004	1594	2	1	1	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	a0005	1594	1	0	0	1	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	a0006	1594	1	0	0	1	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	a0007	1594	1	0	0	1	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	a0008	1594	1	0	1	0	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1CC1_chr8_52617458_52719435	0/0	a0009	1594	1	0	0	1	0	0	copy fasta	RB1CC1	chr8	52617458	52719435
RB1_chr13_48298751_48486890	1/1	a0001	928	298	84	50	130	6	26	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	a0002	925	4	4	0	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	a0003	928	2	2	0	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	a0004	928	1	0	1	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RB1_chr13_48298751_48486890	0/0	a0005	928	1	0	1	0	0	0	copy fasta	RB1	chr13	48298751	48486890
RBAK_chr7_5040860_5074487	1/1	a0001	714	408	75	71	200	16	44	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	a0002	714	13	12	1	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	a0003	714	4	4	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	a0004	714	2	2	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	a0005	714	2	2	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	a0006	714	2	0	0	0	0	2	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	a0007	714	2	2	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	a0008	714	1	0	1	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	a0009	714	1	0	1	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	a0010	714	1	0	1	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	a0011	714	1	1	0	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBAK_chr7_5040860_5074487	0/0	a0012	714	1	0	1	0	0	0	copy fasta	RBAK	chr7	5040860	5074487
RBBP4_chr1_32646208_32691211	1/1	a0001	425	312	88	56	124	14	28	copy fasta	RBBP4	chr1	32646208	32691211
RBBP5_chr1_205081142_205126978	1/1	a0001	538	390	92	72	166	16	42	copy fasta	RBBP5	chr1	205081142	205126978
RBBP6_chr16_24534566_24577863	1/1	a0001	1792	325	80	59	135	12	37	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	a0002	1790	5	0	3	0	0	2	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	a0003	1792	1	0	0	0	0	1	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	a0004	1792	1	0	0	1	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	a0005	1792	1	0	0	1	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	a0006	1792	1	1	0	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	a0007	1792	1	1	0	0	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP6_chr16_24534566_24577863	0/0	a0008	1792	1	0	0	1	0	0	copy fasta	RBBP6	chr16	24534566	24577863
RBBP7_chrX_16839341_16875362	0/0	a0000	0	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	1/1	a0001	425	312	76	58	134	13	29	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	a0002	51	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	a0003	425	1	0	0	0	0	1	copy fasta	RBBP7	chrX	16839341	16875362
RBBP7_chrX_16839341_16875362	0/0	a0004	384	1	0	0	1	0	0	copy fasta	RBBP7	chrX	16839341	16875362
RBBP8NL_chr20_62405237_62432539	1/0	a0001	664	201	57	33	75	5	30	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/1	a0002	664	113	6	19	75	1	11	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0003	664	29	0	7	16	4	2	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0004	664	15	4	8	0	3	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0005	664	12	12	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539