JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RBBP8NL_chr20_62405237_62432539	0/0	a0006	664	11	0	2	9	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0007	664	9	7	2	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0008	664	7	6	1	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0009	664	7	0	0	7	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0010	664	4	0	4	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0011	664	3	1	2	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0012	664	3	0	0	0	0	3	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0013	664	3	0	1	0	1	1	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0014	664	2	2	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0015	664	2	0	1	0	1	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0016	664	1	0	0	0	1	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0017	664	1	0	0	1	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0018	664	1	0	0	1	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0019	664	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0020	664	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0021	664	1	0	1	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0022	664	1	0	0	0	0	1	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0023	664	1	0	0	1	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0024	664	1	1	0	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0025	664	1	0	1	0	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8NL_chr20_62405237_62432539	0/0	a0026	664	1	0	0	1	0	0	copy fasta	RBBP8NL	chr20	62405237	62432539
RBBP8_chr18_22928328_23031486	1/1	a0001	897	319	92	53	132	8	32	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	a0002	897	6	5	1	0	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	a0003	897	2	1	0	0	0	1	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	a0004	897	1	0	0	1	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	a0005	897	1	0	0	1	0	0	copy fasta	RBBP8	chr18	22928328	23031486
RBBP8_chr18_22928328_23031486	0/0	a0006	897	1	0	0	0	0	1	copy fasta	RBBP8	chr18	22928328	23031486
RBBP9_chr20_18481540_18502225	1/1	a0001	186	453	97	78	214	16	46	copy fasta	RBBP9	chr20	18481540	18502225
RBBP9_chr20_18481540_18502225	0/0	a0002	186	1	1	0	0	0	0	copy fasta	RBBP9	chr20	18481540	18502225
RBCK1_chr20_403299_437139	1/1	a0001	510	451	98	86	206	16	43	copy fasta	RBCK1	chr20	403299	437139
RBCK1_chr20_403299_437139	0/0	a0002	510	1	0	0	0	0	1	copy fasta	RBCK1	chr20	403299	437139
RBFA_chr18_80029434_80055651	0/0	a0001	343	173	19	28	94	4	28	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	1/1	a0002	343	168	54	24	68	6	14	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	a0003	343	56	5	17	29	3	2	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	a0004	343	12	10	1	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	a0005	343	2	2	0	0	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	a0006	266	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	a0007	343	1	0	0	0	1	0	copy fasta	RBFA	chr18	80029434	80055651
RBFA_chr18_80029434_80055651	0/0	a0008	343	1	0	0	1	0	0	copy fasta	RBFA	chr18	80029434	80055651
RBFOX1_chr16_6014024_7718340	0/0	a0001	397	66	38	11	3	4	10	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	a0002	397	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_6014024_7718340	0/0	a0003	397	1	0	1	0	0	0	copy fasta	RBFOX1	chr16	6014024	7718340
RBFOX1_chr16_7327845_7718340	1/1	a0001	396	230	76	39	60	14	39	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	a0002	396	1	0	0	0	0	1	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	a0003	396	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	a0004	396	1	0	1	0	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX1_chr16_7327845_7718340	0/0	a0005	396	1	0	0	1	0	0	copy fasta	RBFOX1	chr16	7327845	7718340
RBFOX2_chr22_35733736_36033824	0/1	a0001	447	119	68	12	20	10	8	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX2_chr22_35733736_36033824	1/0	a0002	447	1	0	0	0	0	0	copy fasta	RBFOX2	chr22	35733736	36033824
RBFOX3_chr17_79084345_79616051	1/1	a0001	359	154	64	32	34	6	16	copy fasta	RBFOX3	chr17	79084345	79616051