JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RBIS_chr8_85209048_85225374	1/1	a0001	100	365	91	66	152	14	40	copy fasta	RBIS	chr8	85209048	85225374
RBIS_chr8_85209048_85225374	0/0	a0002	100	2	0	0	2	0	0	copy fasta	RBIS	chr8	85209048	85225374
RBIS_chr8_85209048_85225374	0/0	a0003	100	1	1	0	0	0	0	copy fasta	RBIS	chr8	85209048	85225374
RBKS_chr2_27776379_27895387	1/1	a0001	322	260	72	36	120	4	26	copy fasta	RBKS	chr2	27776379	27895387
RBKS_chr2_27776379_27895387	0/0	a0002	322	4	4	0	0	0	0	copy fasta	RBKS	chr2	27776379	27895387
RBKS_chr2_27776379_27895387	0/0	a0003	322	2	0	2	0	0	0	copy fasta	RBKS	chr2	27776379	27895387
RBKS_chr2_27776379_27895387	0/0	a0004	322	1	1	0	0	0	0	copy fasta	RBKS	chr2	27776379	27895387
RBKS_chr2_27776379_27895387	0/0	a0005	322	1	1	0	0	0	0	copy fasta	RBKS	chr2	27776379	27895387
RBL1_chr20_36991349_37100997	1/1	a0001	1068	339	75	68	138	16	40	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	a0002	1068	5	0	0	5	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	a0003	1068	3	3	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	a0004	1068	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	a0005	1068	1	0	0	1	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	a0006	1068	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	a0007	1068	1	0	0	1	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	a0008	1068	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	a0009	1068	1	1	0	0	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL1_chr20_36991349_37100997	0/0	a0010	1068	1	0	0	1	0	0	copy fasta	RBL1	chr20	36991349	37100997
RBL2_chr16_53429471_53496648	1/0	a0001	1139	244	90	38	74	5	36	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/1	a0002	1139	25	1	15	0	4	4	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	a0003	1139	3	0	0	3	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	a0004	1139	2	0	1	0	1	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	a0005	1139	1	0	0	1	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBL2_chr16_53429471_53496648	0/0	a0006	1148	1	1	0	0	0	0	copy fasta	RBL2	chr16	53429471	53496648
RBM10_chrX_47140221_47191813	1/1	a0001	930	221	72	37	81	7	22	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	a0002	930	2	0	0	2	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	a0003	120	1	0	0	1	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	a0004	930	1	0	1	0	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM10_chrX_47140221_47191813	0/0	a0005	704	1	0	0	1	0	0	copy fasta	RBM10	chrX	47140221	47191813
RBM11_chr21_14211157_14233372	0/1	a0001	281	292	41	44	155	14	37	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	1/0	a0002	281	112	25	23	59	0	4	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	a0003	281	36	17	6	2	4	7	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	a0004	281	7	7	0	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	a0005	281	2	2	0	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	a0006	281	2	1	1	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	a0007	281	2	0	0	2	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	a0008	281	2	1	1	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	a0009	281	1	0	0	1	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	a0010	281	1	0	1	0	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM11_chr21_14211157_14233372	0/0	a0011	281	1	0	0	1	0	0	copy fasta	RBM11	chr21	14211157	14233372
RBM12B_chr8_93723155_93746009	1/1	a0001	1001	358	92	67	151	11	35	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	a0002	1001	23	2	7	12	1	1	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	a0003	1001	2	0	2	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	a0004	1001	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	a0005	1001	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	a0006	1001	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	a0007	1001	1	0	0	1	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12B_chr8_93723155_93746009	0/0	a0008	1001	1	1	0	0	0	0	copy fasta	RBM12B	chr8	93723155	93746009
RBM12_chr20_35643925_35669900	1/1	a0001	932	283	75	45	116	11	34	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	a0002	934	13	1	11	0	1	0	copy fasta	RBM12	chr20	35643925	35669900