JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RBM12_chr20_35643925_35669900	0/0	a0003	932	10	9	1	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	a0004	932	1	0	1	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM12_chr20_35643925_35669900	0/0	a0005	922	1	1	0	0	0	0	copy fasta	RBM12	chr20	35643925	35669900
RBM14_chr11_66611630_66634934	1/1	a0001	669	400	89	61	190	16	42	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	a0002	669	6	0	0	6	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	a0003	669	1	1	0	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM14_chr11_66611630_66634934	0/0	a0004	669	1	0	1	0	0	0	copy fasta	RBM14	chr11	66611630	66634934
RBM15B_chr3_51386285_51402908	1/1	a0001	890	372	72	66	183	14	35	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	a0002	890	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	a0003	890	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	a0004	890	1	0	0	0	0	1	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	a0005	890	1	0	0	0	0	1	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	a0006	890	1	0	0	1	0	0	copy fasta	RBM15B	chr3	51386285	51402908
RBM15B_chr3_51386285_51402908	0/0	a0007	890	1	0	0	0	0	1	copy fasta	RBM15B	chr3	51386285	51402908
RBM15_chr1_110334377_110351677	1/1	a0001	977	442	92	78	217	11	42	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	a0002	977	4	0	0	1	0	3	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	a0003	977	3	0	0	3	0	0	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	a0004	977	1	0	0	1	0	0	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	a0005	977	1	0	0	0	1	0	copy fasta	RBM15	chr1	110334377	110351677
RBM15_chr1_110334377_110351677	0/0	a0006	977	1	0	0	0	0	1	copy fasta	RBM15	chr1	110334377	110351677
RBM17_chr10_6084034_6122447	1/1	a0001	401	434	94	80	200	16	42	copy fasta	RBM17	chr10	6084034	6122447
RBM18_chr9_122232622_122269840	1/1	a0001	190	378	85	74	157	18	42	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	a0002	190	1	1	0	0	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM18_chr9_122232622_122269840	0/0	a0003	190	1	0	0	1	0	0	copy fasta	RBM18	chr9	122232622	122269840
RBM19_chr12_113817057_113971325	0/0	a0001	960	207	36	45	92	8	26	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/1	a0002	960	51	9	13	17	6	5	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0003	960	40	2	4	26	1	7	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0004	960	20	18	2	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0005	960	12	12	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0006	960	4	0	2	0	1	1	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0007	960	4	3	1	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0008	961	3	0	3	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	1/0	a0009	960	2	1	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0010	960	2	2	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0011	960	1	0	0	1	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0012	960	1	0	0	0	0	1	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0013	960	1	0	0	0	0	1	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0014	960	1	0	0	1	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0015	960	1	1	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0016	960	1	0	0	1	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0017	960	1	0	0	1	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0018	960	1	0	0	1	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0019	960	1	1	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0020	960	1	0	0	0	0	1	copy fasta	RBM19	chr12	113817057	113971325
RBM19_chr12_113817057_113971325	0/0	a0021	960	1	1	0	0	0	0	copy fasta	RBM19	chr12	113817057	113971325
RBM20_chr10_110639336_110844468	0/1	a0001	1227	187	37	50	59	10	30	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	1/0	a0002	1227	62	28	8	20	4	1	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0003	1227	3	2	1	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0004	1227	2	0	0	2	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0005	1227	2	1	1	0	0	0	copy fasta	RBM20	chr10	110639336	110844468