JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RBM20_chr10_110639336_110844468	0/0	a0006	1227	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0007	1227	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0008	1227	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0009	1227	1	0	0	0	0	1	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0010	1227	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0011	1227	1	0	0	1	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0012	1227	1	0	0	1	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0013	1227	1	0	0	0	0	1	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0014	1227	1	0	0	1	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0015	1227	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0016	1227	1	1	0	0	0	0	copy fasta	RBM20	chr10	110639336	110844468
RBM20_chr10_110639336_110844468	0/0	a0017	1227	1	0	0	0	0	1	copy fasta	RBM20	chr10	110639336	110844468
RBM22_chr5_150685792_150706062	1/1	a0001	420	370	90	62	158	18	40	copy fasta	RBM22	chr5	150685792	150706062
RBM23_chr14_22888204_22924149	1/0	a0001	439	143	85	17	27	4	9	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	a0002	440	122	3	35	62	5	17	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/1	a0003	440	64	0	14	39	2	8	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	a0004	439	20	7	10	1	0	2	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	a0005	439	3	3	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	a0006	440	2	0	2	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	a0007	440	2	0	1	0	1	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	a0008	440	1	0	1	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	a0009	439	1	1	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	a0010	440	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	a0011	439	1	1	0	0	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	a0012	439	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM23_chr14_22888204_22924149	0/0	a0013	440	1	0	0	1	0	0	copy fasta	RBM23	chr14	22888204	22924149
RBM24_chr6_17276361_17298871	1/1	a0001	236	418	92	75	188	14	47	copy fasta	RBM24	chr6	17276361	17298871
RBM24_chr6_17276361_17298871	0/0	a0002	236	23	0	9	14	0	0	copy fasta	RBM24	chr6	17276361	17298871
RBM24_chr6_17276361_17298871	0/0	a0003	236	1	0	0	0	0	1	copy fasta	RBM24	chr6	17276361	17298871
RBM25_chr14_73053534_73128899	1/1	a0001	843	388	90	76	172	10	38	copy fasta	RBM25	chr14	73053534	73128899
RBM26_chr13_79313868_79411255	1/1	a0001	1007	324	88	59	121	14	40	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	a0002	1007	1	1	0	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	a0003	1007	1	0	0	1	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	a0004	1007	1	1	0	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM26_chr13_79313868_79411255	0/0	a0005	1007	1	0	1	0	0	0	copy fasta	RBM26	chr13	79313868	79411255
RBM27_chr5_146198605_146294223	1/1	a0001	1060	270	71	48	106	10	33	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	a0002	1060	1	0	0	0	0	1	copy fasta	RBM27	chr5	146198605	146294223
RBM27_chr5_146198605_146294223	0/0	a0003	1060	1	1	0	0	0	0	copy fasta	RBM27	chr5	146198605	146294223
RBM28_chr7_128292685_128348908	1/1	a0001	759	343	62	72	161	13	33	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	a0002	759	12	11	1	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	a0003	759	11	10	1	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	a0004	759	4	0	1	0	2	1	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	a0005	759	2	0	0	2	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	a0006	759	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	a0007	759	2	2	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	a0008	759	1	1	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	a0009	759	1	1	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	a0010	759	1	0	0	1	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	a0011	759	1	0	1	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM28_chr7_128292685_128348908	0/0	a0012	759	1	0	0	0	1	0	copy fasta	RBM28	chr7	128292685	128348908