JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RBM28_chr7_128292685_128348908	0/0	a0013	759	1	1	0	0	0	0	copy fasta	RBM28	chr7	128292685	128348908
RBM33_chr7_155639661_155786480	0/0	a0001	1170	152	63	13	64	2	10	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	1/1	a0002	1170	144	23	36	56	7	20	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	a0003	1170	3	2	1	0	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	a0004	1170	3	0	0	1	0	2	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	a0005	1170	1	0	0	1	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	a0006	1170	1	1	0	0	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	a0007	1166	1	0	0	0	1	0	copy fasta	RBM33	chr7	155639661	155786480
RBM33_chr7_155639661_155786480	0/0	a0008	1170	1	1	0	0	0	0	copy fasta	RBM33	chr7	155639661	155786480
RBM34_chr1_235126183_235166250	1/1	a0001	430	382	88	75	165	14	38	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	a0002	430	2	0	0	2	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	a0003	430	1	0	0	1	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	a0004	430	1	1	0	0	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	a0005	430	1	1	0	0	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM34_chr1_235126183_235166250	0/0	a0006	430	1	0	1	0	0	0	copy fasta	RBM34	chr1	235126183	235166250
RBM38_chr20_57386396_57414333	1/1	a0001	239	366	71	79	152	18	44	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	a0002	239	27	23	4	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	a0003	239	3	0	1	0	0	2	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	a0004	239	2	2	0	0	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	a0005	239	1	0	0	1	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM38_chr20_57386396_57414333	0/0	a0006	239	1	0	0	1	0	0	copy fasta	RBM38	chr20	57386396	57414333
RBM39_chr20_35696347_35747260	1/1	a0001	530	274	86	46	96	12	32	copy fasta	RBM39	chr20	35696347	35747260
RBM3_chrX_48569484_48586162	1/1	a0001	157	294	80	51	123	10	28	copy fasta	RBM3	chrX	48569484	48586162
RBM3_chrX_48569484_48586162	0/0	a0002	63	1	0	0	1	0	0	copy fasta	RBM3	chrX	48569484	48586162
RBM41_chrX_107056885_107123822	1/1	a0001	437	290	74	49	138	7	20	copy fasta	RBM41	chrX	107056885	107123822
RBM42_chr19_35624036_35642685	1/1	a0001	480	427	96	84	187	16	42	copy fasta	RBM42	chr19	35624036	35642685
RBM42_chr19_35624036_35642685	0/0	a0002	480	1	0	0	1	0	0	copy fasta	RBM42	chr19	35624036	35642685
RBM43_chr2_151242940_151266863	1/1	a0001	357	401	83	75	196	13	32	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	a0002	357	11	9	1	0	0	1	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	a0003	357	4	0	0	4	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	a0004	357	2	0	1	0	1	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	a0005	357	1	0	1	0	0	0	copy fasta	RBM43	chr2	151242940	151266863
RBM43_chr2_151242940_151266863	0/0	a0006	357	1	0	0	0	0	1	copy fasta	RBM43	chr2	151242940	151266863
RBM44_chr2_237793779_237847805	1/1	a0001	1051	353	62	56	174	16	43	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	a0002	1051	10	9	1	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	a0003	1051	9	7	2	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	a0004	1051	2	2	0	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	a0005	1051	1	0	0	1	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	a0006	1051	1	0	0	0	0	1	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	a0007	1051	1	0	1	0	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM44_chr2_237793779_237847805	0/0	a0008	1051	1	0	0	1	0	0	copy fasta	RBM44	chr2	237793779	237847805
RBM45_chr2_178107437_178134656	1/1	a0001	474	363	94	64	135	18	50	copy fasta	RBM45	chr2	178107437	178134656
RBM45_chr2_178107437_178134656	0/0	a0002	474	1	0	0	1	0	0	copy fasta	RBM45	chr2	178107437	178134656
RBM46_chr4_154776272_154833813	1/1	a0001	533	340	93	53	142	12	38	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	a0002	533	33	1	3	29	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM46_chr4_154776272_154833813	0/0	a0003	533	1	0	0	1	0	0	copy fasta	RBM46	chr4	154776272	154833813
RBM47_chr4_40418280_40634864	0/0	a0001	593	186	63	41	61	7	14	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	1/1	a0002	593	88	22	9	44	1	10	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	a0003	586	1	1	0	0	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	a0004	593	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864