JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RBM47_chr4_40418280_40634864	0/0	a0005	589	1	0	0	1	0	0	copy fasta	RBM47	chr4	40418280	40634864
RBM47_chr4_40418280_40634864	0/0	a0006	593	1	0	0	0	0	1	copy fasta	RBM47	chr4	40418280	40634864
RBM48_chr7_92523795_92545481	1/1	a0001	367	385	76	55	194	14	44	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	a0002	367	4	4	0	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	a0003	367	3	0	0	3	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	a0004	367	1	0	1	0	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	a0005	367	1	0	0	0	0	1	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	a0006	367	1	0	0	1	0	0	copy fasta	RBM48	chr7	92523795	92545481
RBM48_chr7_92523795_92545481	0/0	a0007	367	1	0	0	0	0	1	copy fasta	RBM48	chr7	92523795	92545481
RBM4B_chr11_66659998_66682887	1/1	a0001	359	397	96	55	190	18	36	copy fasta	RBM4B	chr11	66659998	66682887
RBM4B_chr11_66659998_66682887	0/0	a0002	359	1	0	1	0	0	0	copy fasta	RBM4B	chr11	66659998	66682887
RBM4_chr11_66633703_66651468	1/1	a0001	364	405	94	67	192	14	36	copy fasta	RBM4	chr11	66633703	66651468
RBM4_chr11_66633703_66651468	0/0	a0002	364	1	0	1	0	0	0	copy fasta	RBM4	chr11	66633703	66651468
RBM5_chr3_50083919_50124021	1/1	a0001	815	283	85	54	98	18	26	copy fasta	RBM5	chr3	50083919	50124021
RBM5_chr3_50083919_50124021	0/0	a0002	815	1	1	0	0	0	0	copy fasta	RBM5	chr3	50083919	50124021
RBM6_chr3_49935150_50082249	1/1	a0001	1123	203	83	44	47	11	16	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	a0002	1123	6	6	0	0	0	0	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	a0003	1123	3	0	0	3	0	0	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	a0004	1123	3	0	3	0	0	0	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	a0005	1123	2	0	1	0	1	0	copy fasta	RBM6	chr3	49935150	50082249
RBM6_chr3_49935150_50082249	0/0	a0006	1123	1	1	0	0	0	0	copy fasta	RBM6	chr3	49935150	50082249
RBM7_chr11_114395666_114415607	1/1	a0001	267	410	94	74	184	12	44	copy fasta	RBM7	chr11	114395666	114415607
RBM8A_chr1_145916556_145932484	1/1	a0001	174	382	90	76	164	8	42	copy fasta	RBM8A	chr1	145916556	145932484
RBMS1_chr2_160267151_160498807	1/1	a0001	406	328	80	70	126	16	34	copy fasta	RBMS1	chr2	160267151	160498807
RBMS2_chr12_56516820_56601193	1/1	a0001	407	280	88	54	94	12	30	copy fasta	RBMS2	chr12	56516820	56601193
RBMS3_chr3_29276071_30015386	1/1	a0001	437	115	51	20	20	10	12	copy fasta	RBMS3	chr3	29276071	30015386
RBMS3_chr3_29276071_30015386	0/0	a0002	437	1	1	0	0	0	0	copy fasta	RBMS3	chr3	29276071	30015386
RBMX2_chrX_130396987_130418656	1/1	a0001	322	300	69	59	133	11	26	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	a0002	322	2	2	0	0	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	a0003	3	1	0	0	1	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	a0004	322	1	0	0	1	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMX2_chrX_130396987_130418656	0/0	a0005	322	1	1	0	0	0	0	copy fasta	RBMX2	chrX	130396987	130418656
RBMXL1_chr1_88974456_88997629	1/1	a0001	390	420	97	80	185	15	41	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	a0002	390	1	1	0	0	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	a0003	390	1	0	0	0	1	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	a0004	390	1	0	0	0	0	1	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	a0005	390	1	0	0	1	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	a0006	390	1	0	0	1	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL1_chr1_88974456_88997629	0/0	a0007	390	1	0	0	1	0	0	copy fasta	RBMXL1	chr1	88974456	88997629
RBMXL2_chr11_7083998_7096148	0/1	a0001	392	353	58	54	197	12	31	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	a0002	392	52	23	16	4	4	5	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	a0003	128	36	7	6	16	0	7	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	1/0	a0004	392	8	5	2	0	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	a0005	128	4	2	0	0	0	2	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	a0006	392	2	2	0	0	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	a0007	392	1	0	0	0	0	1	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	a0008	392	1	0	0	1	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	a0009	392	1	0	0	1	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	a0010	128	1	0	0	1	0	0	copy fasta	RBMXL2	chr11	7083998	7096148
RBMXL2_chr11_7083998_7096148	0/0	a0011	128	1	1	0	0	0	0	copy fasta	RBMXL2	chr11	7083998	7096148