JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RBMXL3_chrX_115184410_115197868	0/1	a0001	1076	128	21	15	75	5	11	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0002	1076	35	2	9	23	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0003	1076	32	9	7	12	2	2	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0004	1076	17	0	9	8	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	1/0	a0005	1067	16	8	3	3	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0006	1076	8	0	1	1	0	6	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0007	1076	7	6	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0008	1076	5	5	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0009	1076	4	0	3	0	1	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0010	1076	3	3	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0011	127	3	0	0	0	1	2	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0012	1076	3	0	0	3	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0013	127	3	1	1	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0014	1076	2	0	0	1	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0015	1076	2	2	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0016	1076	2	0	0	2	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0017	1067	2	2	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0018	1076	2	1	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0019	1076	2	0	2	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0020	1076	2	0	0	2	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0021	1076	2	2	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0022	1076	2	2	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0023	1076	2	2	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0024	1076	2	2	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0025	1076	1	0	1	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0026	168	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0027	1076	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0028	1076	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0029	1076	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0030	1067	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0031	1067	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0032	1076	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0033	432	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0034	1076	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0035	1076	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0036	1076	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0037	725	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0038	1076	1	0	0	0	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0039	1076	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0040	1076	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0041	1076	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0042	966	1	0	0	0	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0043	1115	1	0	0	0	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0044	1067	1	0	0	0	0	1	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0045	1076	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0046	1076	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0047	1076	1	0	0	1	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0048	1076	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0049	1076	1	1	0	0	0	0	copy fasta	RBMXL3	chrX	115184410	115197868
RBMXL3_chrX_115184410_115197868	0/0	a0050	1076	1	0	0	0	0	1	copy fasta	RBMXL3	chrX	115184410	115197868