JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RBP2_chr3_139447884_139481516	0/0	a0002	134	1	0	0	1	0	0	copy fasta	RBP2	chr3	139447884	139481516
RBP3_chr10_47343363_47362881	1/1	a0001	1247	384	92	68	170	13	39	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0002	1247	6	0	0	6	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0003	1247	4	3	1	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0004	1247	4	0	0	4	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0005	1247	3	0	2	0	1	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0006	1247	2	1	1	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0007	1247	2	0	0	2	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0008	1247	1	0	0	0	1	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0009	1247	1	0	1	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0010	1247	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0011	1247	1	0	0	0	0	1	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0012	1247	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0013	1247	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0014	1247	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0015	1247	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0016	1247	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0017	1247	1	1	0	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0018	1247	1	0	0	0	1	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0019	1247	1	0	0	1	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP3_chr10_47343363_47362881	0/0	a0020	1247	1	0	1	0	0	0	copy fasta	RBP3	chr10	47343363	47362881
RBP4_chr10_93586694_93606235	1/1	a0001	201	423	100	78	178	17	48	copy fasta	RBP4	chr10	93586694	93606235
RBP4_chr10_93586694_93606235	0/0	a0002	201	1	0	0	0	1	0	copy fasta	RBP4	chr10	93586694	93606235
RBP5_chr12_7118686_7133889	1/1	a0001	135	160	38	28	71	7	14	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	a0002	135	108	19	29	34	3	23	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	a0003	135	99	16	10	66	4	3	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	a0004	135	45	4	5	24	2	10	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	a0005	135	11	11	0	0	0	0	copy fasta	RBP5	chr12	7118686	7133889
RBP5_chr12_7118686_7133889	0/0	a0006	80	1	0	0	1	0	0	copy fasta	RBP5	chr12	7118686	7133889
RBP7_chr1_9992228_10021021	1/1	a0001	134	374	94	64	154	16	44	copy fasta	RBP7	chr1	9992228	10021021
RBP7_chr1_9992228_10021021	0/0	a0002	134	2	0	0	2	0	0	copy fasta	RBP7	chr1	9992228	10021021
RBPJL_chr20_45301840_45322824	1/1	a0001	517	425	82	78	203	17	43	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	a0002	513	6	6	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	a0003	517	3	3	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	a0004	517	2	2	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	a0005	517	2	1	1	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	a0006	517	2	1	0	0	1	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	a0007	517	2	2	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	a0008	517	1	0	0	1	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	a0009	517	1	1	0	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	a0010	517	1	0	1	0	0	0	copy fasta	RBPJL	chr20	45301840	45322824
RBPJL_chr20_45301840_45322824	0/0	a0011	517	1	0	0	0	0	1	copy fasta	RBPJL	chr20	45301840	45322824
RBPJ_chr4_26316014_26439923	1/1	a0001	487	316	82	46	134	14	38	copy fasta	RBPJ	chr4	26316014	26439923
RBPMS2_chr15_64734891_64780589	1/1	a0001	209	251	93	46	50	16	44	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS2_chr15_64734891_64780589	0/0	a0002	209	1	1	0	0	0	0	copy fasta	RBPMS2	chr15	64734891	64780589
RBPMS_chr8_30379541_30577256	1/1	a0001	196	293	66	56	123	10	36	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	a0002	196	10	10	0	0	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBPMS_chr8_30379541_30577256	0/0	a0003	196	1	0	0	1	0	0	copy fasta	RBPMS	chr8	30379541	30577256
RBSN_chr3_15065073_15104148	1/1	a0001	784	314	76	61	128	14	33	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	a0002	784	29	2	9	15	0	3	copy fasta	RBSN	chr3	15065073	15104148