JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RBSN_chr3_15065073_15104148	0/0	a0003	784	15	15	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	a0004	784	1	1	0	0	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBSN_chr3_15065073_15104148	0/0	a0005	784	1	0	0	1	0	0	copy fasta	RBSN	chr3	15065073	15104148
RBX1_chr22_40946378_40978309	1/1	a0001	108	320	94	52	112	16	44	copy fasta	RBX1	chr22	40946378	40978309
RC3H1_chr1_173926084_174027357	1/1	a0001	1133	290	77	39	139	6	27	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	a0002	1133	11	4	3	0	3	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	a0003	1133	2	2	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	a0004	1133	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	a0005	1133	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	a0006	1133	1	1	0	0	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	a0007	1133	1	0	0	1	0	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	a0008	1133	1	0	0	0	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	a0009	1133	1	0	0	0	1	0	copy fasta	RC3H1	chr1	173926084	174027357
RC3H1_chr1_173926084_174027357	0/0	a0010	1133	1	0	0	0	0	1	copy fasta	RC3H1	chr1	173926084	174027357
RC3H2_chr9_122839556_122910359	1/1	a0001	1191	308	83	66	108	16	33	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	a0002	1191	10	1	0	9	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	a0003	1191	1	0	0	0	0	1	copy fasta	RC3H2	chr9	122839556	122910359
RC3H2_chr9_122839556_122910359	0/0	a0004	1191	1	0	0	1	0	0	copy fasta	RC3H2	chr9	122839556	122910359
RCAN1_chr21_34511442_34620113	1/1	a0001	252	375	91	67	159	12	44	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	a0002	252	1	1	0	0	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	a0003	252	1	0	0	1	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN1_chr21_34511442_34620113	0/0	a0004	252	1	0	1	0	0	0	copy fasta	RCAN1	chr21	34511442	34620113
RCAN2_chr6_46215736_46496449	0/0	a0001	243	157	56	31	50	8	12	copy fasta	RCAN2	chr6	46215736	46496449
RCAN2_chr6_46215736_46496449	0/0	a0002	243	1	0	1	0	0	0	copy fasta	RCAN2	chr6	46215736	46496449
RCAN3_chr1_24497836_24546040	1/1	a0001	241	323	85	61	125	14	36	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	a0002	241	6	5	1	0	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCAN3_chr1_24497836_24546040	0/0	a0003	241	3	0	0	3	0	0	copy fasta	RCAN3	chr1	24497836	24546040
RCBTB1_chr13_49526946_49590558	0/1	a0001	531	220	32	48	107	11	21	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	1/0	a0002	531	196	63	19	89	5	19	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	a0003	531	1	1	0	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB1_chr13_49526946_49590558	0/0	a0004	531	1	0	1	0	0	0	copy fasta	RCBTB1	chr13	49526946	49590558
RCBTB2_chr13_48483963_48538080	1/1	a0001	551	314	89	53	133	7	30	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	a0002	551	4	3	1	0	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	a0003	551	1	0	0	0	1	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCBTB2_chr13_48483963_48538080	0/0	a0004	551	1	0	0	1	0	0	copy fasta	RCBTB2	chr13	48483963	48538080
RCC1L_chr7_75037183_75078802	1/0	a0001	464	154	69	33	22	8	21	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/1	a0002	464	107	9	26	44	8	19	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	a0003	464	3	3	0	0	0	0	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	a0004	464	2	2	0	0	0	0	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	a0005	464	1	1	0	0	0	0	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	a0006	464	1	0	0	0	0	1	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	a0007	464	1	0	1	0	0	0	copy fasta	RCC1L	chr7	75037183	75078802
RCC1L_chr7_75037183_75078802	0/0	a0008	464	1	0	0	0	0	1	copy fasta	RCC1L	chr7	75037183	75078802
RCC1_chr1_28501043_28543989	1/1	a0001	421	294	88	68	84	18	34	copy fasta	RCC1	chr1	28501043	28543989
RCC2_chr1_17401760_17444677	1/1	a0001	522	376	86	73	158	12	45	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	a0002	522	11	8	3	0	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	a0003	522	1	0	0	0	0	1	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	a0004	522	1	0	0	1	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCC2_chr1_17401760_17444677	0/0	a0005	522	1	0	0	1	0	0	copy fasta	RCC2	chr1	17401760	17444677
RCCD1_chr15_90949884_90968125	1/1	a0001	376	309	90	58	112	14	33	copy fasta	RCCD1	chr15	90949884	90968125