JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RD3L_chr14_103935426_103947529	0/0	a0003	198	16	2	9	0	4	1	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	a0004	198	5	0	3	0	2	0	copy fasta	RD3L	chr14	103935426	103947529
RD3L_chr14_103935426_103947529	0/0	a0005	198	1	0	1	0	0	0	copy fasta	RD3L	chr14	103935426	103947529
RD3_chr1_211471522_211497162	1/1	a0001	195	405	78	70	196	14	45	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	a0002	195	6	6	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	a0003	195	4	4	0	0	0	0	copy fasta	RD3	chr1	211471522	211497162
RD3_chr1_211471522_211497162	0/0	a0004	195	1	0	0	0	0	1	copy fasta	RD3	chr1	211471522	211497162
RDH10_chr8_73289602_73330281	1/1	a0001	341	394	90	74	186	16	26	copy fasta	RDH10	chr8	73289602	73330281
RDH10_chr8_73289602_73330281	0/0	a0002	341	2	0	0	0	0	2	copy fasta	RDH10	chr8	73289602	73330281
RDH11_chr14_67671800_67700764	1/1	a0001	318	435	95	80	201	18	39	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	a0002	318	1	1	0	0	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	a0003	318	1	0	0	1	0	0	copy fasta	RDH11	chr14	67671800	67700764
RDH11_chr14_67671800_67700764	0/0	a0004	318	1	0	0	0	0	1	copy fasta	RDH11	chr14	67671800	67700764
RDH12_chr14_67696886_67739451	1/1	a0001	316	380	80	70	173	14	41	copy fasta	RDH12	chr14	67696886	67739451
RDH12_chr14_67696886_67739451	0/0	a0002	316	52	9	11	27	2	3	copy fasta	RDH12	chr14	67696886	67739451
RDH12_chr14_67696886_67739451	0/0	a0003	316	1	0	1	0	0	0	copy fasta	RDH12	chr14	67696886	67739451
RDH12_chr14_67696886_67739451	0/0	a0004	316	1	1	0	0	0	0	copy fasta	RDH12	chr14	67696886	67739451
RDH13_chr19_55039316_55068148	0/1	a0001	331	308	63	63	127	18	36	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	a0002	331	58	1	8	41	0	8	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	a0003	331	3	0	0	3	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	a0004	331	2	0	0	2	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	a0005	331	1	0	1	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	a0006	331	1	0	0	0	0	1	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	a0007	331	1	0	0	0	0	1	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	a0008	331	1	1	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	a0009	331	1	1	0	0	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH13_chr19_55039316_55068148	0/0	a0010	331	1	0	0	1	0	0	copy fasta	RDH13	chr19	55039316	55068148
RDH14_chr2_18549723_18565653	1/1	a0001	336	429	93	83	204	16	31	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	a0002	336	19	0	1	11	0	7	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	a0003	336	2	2	0	0	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	a0004	336	1	0	0	1	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH14_chr2_18549723_18565653	0/0	a0005	336	1	1	0	0	0	0	copy fasta	RDH14	chr2	18549723	18565653
RDH16_chr12_56946431_56962608	1/1	a0001	317	366	86	73	151	12	42	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	a0002	317	8	8	0	0	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	a0003	317	1	0	0	1	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH16_chr12_56946431_56962608	0/0	a0004	317	1	0	1	0	0	0	copy fasta	RDH16	chr12	56946431	56962608
RDH5_chr12_55715393_55729705	1/1	a0001	318	393	90	67	177	14	43	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	a0002	318	6	0	3	3	0	0	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	a0003	318	5	4	1	0	0	0	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	a0004	318	2	2	0	0	0	0	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	a0005	318	1	0	0	0	0	1	copy fasta	RDH5	chr12	55715393	55729705
RDH5_chr12_55715393_55729705	0/0	a0006	318	1	0	1	0	0	0	copy fasta	RDH5	chr12	55715393	55729705
RDH8_chr19_10008483_10027279	0/0	a0001	311	186	24	27	102	7	26	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	1/1	a0002	311	185	30	43	85	10	15	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	a0003	311	85	36	11	31	1	6	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	a0004	311	2	1	1	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	a0005	311	1	0	1	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	a0006	311	1	1	0	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	a0007	311	1	0	1	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	a0008	311	1	1	0	0	0	0	copy fasta	RDH8	chr19	10008483	10027279