JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RDH8_chr19_10008483_10027279	0/0	a0009	311	1	0	0	0	0	1	copy fasta	RDH8	chr19	10008483	10027279
RDH8_chr19_10008483_10027279	0/0	a0010	311	1	1	0	0	0	0	copy fasta	RDH8	chr19	10008483	10027279
RDM1_chr17_35913080_35935773	0/1	a0001	284	207	47	35	101	8	15	copy fasta	RDM1	chr17	35913080	35935773
RDM1_chr17_35913080_35935773	0/0	a0002	284	116	41	19	42	2	12	copy fasta	RDM1	chr17	35913080	35935773
RDM1_chr17_35913080_35935773	0/0	a0003	284	31	1	2	27	0	1	copy fasta	RDM1	chr17	35913080	35935773
RDM1_chr17_35913080_35935773	0/0	a0004	284	1	1	0	0	0	0	copy fasta	RDM1	chr17	35913080	35935773
RDX_chr11_110224441_110301614	1/1	a0001	583	374	96	62	164	16	34	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	a0002	583	1	0	0	1	0	0	copy fasta	RDX	chr11	110224441	110301614
RDX_chr11_110224441_110301614	0/0	a0003	583	1	0	0	1	0	0	copy fasta	RDX	chr11	110224441	110301614
REC114_chr15_73438164_73565013	1/1	a0001	266	174	58	22	72	4	16	copy fasta	REC114	chr15	73438164	73565013
REC114_chr15_73438164_73565013	0/0	a0002	266	14	12	2	0	0	0	copy fasta	REC114	chr15	73438164	73565013
REC8_chr14_24167080_24185254	1/1	a0001	547	428	88	70	202	16	50	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	a0002	547	4	0	1	3	0	0	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	a0003	547	2	2	0	0	0	0	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	a0004	547	1	0	1	0	0	0	copy fasta	REC8	chr14	24167080	24185254
REC8_chr14_24167080_24185254	0/0	a0005	547	1	0	0	1	0	0	copy fasta	REC8	chr14	24167080	24185254
RECK_chr9_36031913_36129455	1/1	a0001	971	323	78	64	135	10	34	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	a0002	971	60	11	7	36	4	2	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	a0003	971	5	5	0	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	a0004	971	1	0	1	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	a0005	971	1	0	0	1	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	a0006	971	1	1	0	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECK_chr9_36031913_36129455	0/0	a0007	971	1	1	0	0	0	0	copy fasta	RECK	chr9	36031913	36129455
RECQL4_chr8_144506288_144522833	0/0	a0001	1208	136	43	22	50	8	13	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/1	a0002	1208	111	7	31	48	9	15	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	1/0	a0003	1208	45	0	3	41	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0004	1208	26	17	0	9	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0005	1208	20	0	3	11	0	6	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0006	1208	6	0	4	2	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0007	1208	5	5	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0008	1208	5	0	5	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0009	1208	5	5	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0010	1208	5	0	5	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0011	1208	4	4	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0012	1208	4	4	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0013	1206	3	1	0	2	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0014	1208	3	3	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0015	1208	2	0	2	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0016	1208	2	0	0	0	0	2	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0017	1208	2	0	2	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0018	1208	2	2	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0019	1208	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0020	1208	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0021	1208	1	0	0	0	0	1	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0022	1208	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0023	1208	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0024	1208	1	0	0	0	1	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0025	1208	1	0	1	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0026	1208	1	0	0	0	0	1	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0027	1206	1	0	0	0	0	1	copy fasta	RECQL4	chr8	144506288	144522833