JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RECQL4_chr8_144506288_144522833	0/0	a0028	1208	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0029	1208	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0030	1208	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0031	1208	1	0	0	0	0	1	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0032	1208	1	0	0	0	0	1	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0033	1208	1	0	1	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0034	1208	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0035	1208	1	0	1	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0036	1208	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0037	1208	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0038	1208	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0039	1208	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0040	1208	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0041	1208	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0042	1208	1	0	0	1	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0043	1208	1	0	0	0	0	1	copy fasta	RECQL4	chr8	144506288	144522833
RECQL4_chr8_144506288_144522833	0/0	a0044	1208	1	1	0	0	0	0	copy fasta	RECQL4	chr8	144506288	144522833
RECQL5_chr17_75621854_75672154	1/1	a0001	991	260	70	48	101	7	32	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	a0002	991	97	17	19	43	5	13	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	a0003	991	5	0	0	5	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	a0004	991	2	0	0	0	2	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	a0005	991	2	1	1	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	a0006	991	2	2	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	a0007	991	2	2	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	a0008	991	2	2	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	a0009	991	2	2	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	a0010	991	1	1	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	a0011	991	1	0	0	0	0	1	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	a0012	991	1	0	0	1	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL5_chr17_75621854_75672154	0/0	a0013	991	1	1	0	0	0	0	copy fasta	RECQL5	chr17	75621854	75672154
RECQL_chr12_21463910_21506635	1/1	a0001	649	381	83	58	187	14	37	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	a0002	649	9	9	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	a0003	649	8	7	1	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	a0004	649	2	0	0	0	2	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	a0005	649	1	1	0	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	a0006	649	1	0	0	0	0	1	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	a0007	649	1	0	1	0	0	0	copy fasta	RECQL	chr12	21463910	21506635
RECQL_chr12_21463910_21506635	0/0	a0008	649	1	0	0	1	0	0	copy fasta	RECQL	chr12	21463910	21506635
REELD1_chr4_146209538_146237267	1/1	a0001	526	235	25	50	127	7	24	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0002	526	39	1	9	17	4	8	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0003	526	36	9	8	9	3	7	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0004	526	28	19	3	4	0	2	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0005	526	24	0	1	20	0	3	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0006	526	14	0	0	14	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0007	526	8	8	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0008	526	7	0	1	6	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0009	526	6	6	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0010	526	5	5	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0011	526	5	5	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0012	526	5	4	1	0	0	0	copy fasta	REELD1	chr4	146209538	146237267