JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
REELD1_chr4_146209538_146237267	0/0	a0013	526	4	2	2	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0014	526	3	0	0	3	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0015	526	3	2	1	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0016	526	2	2	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0017	526	2	0	0	2	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0018	526	1	0	0	1	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0019	526	1	0	1	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0020	526	1	1	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0021	526	1	0	0	0	1	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0022	526	1	0	0	1	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0023	526	1	1	0	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0024	526	1	0	1	0	0	0	copy fasta	REELD1	chr4	146209538	146237267
REELD1_chr4_146209538_146237267	0/0	a0025	526	1	0	0	0	1	0	copy fasta	REELD1	chr4	146209538	146237267
REEP1_chr2_86208993_86342626	1/1	a0001	284	311	89	56	119	13	32	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	a0002	284	5	0	0	5	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	a0003	284	2	2	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	a0004	284	1	0	0	0	1	0	copy fasta	REEP1	chr2	86208993	86342626
REEP1_chr2_86208993_86342626	0/0	a0005	284	1	1	0	0	0	0	copy fasta	REEP1	chr2	86208993	86342626
REEP2_chr5_138434057_138451965	1/1	a0001	254	431	90	80	198	16	45	copy fasta	REEP2	chr5	138434057	138451965
REEP2_chr5_138434057_138451965	0/0	a0002	254	1	0	0	0	0	1	copy fasta	REEP2	chr5	138434057	138451965
REEP3_chr10_63516401_63630128	1/1	a0001	255	281	74	41	128	16	20	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	a0002	255	2	1	1	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP3_chr10_63516401_63630128	0/0	a0003	255	1	1	0	0	0	0	copy fasta	REEP3	chr10	63516401	63630128
REEP4_chr8_22133020_22146907	1/1	a0001	257	379	94	73	146	15	49	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	a0002	257	14	0	5	8	0	1	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	a0003	257	5	0	2	0	3	0	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	a0004	257	1	0	0	1	0	0	copy fasta	REEP4	chr8	22133020	22146907
REEP4_chr8_22133020_22146907	0/0	a0005	257	1	0	0	1	0	0	copy fasta	REEP4	chr8	22133020	22146907
REEP5_chr5_112871385_112927227	1/1	a0001	189	336	90	64	130	16	34	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	a0002	189	3	1	2	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP5_chr5_112871385_112927227	0/0	a0003	189	1	1	0	0	0	0	copy fasta	REEP5	chr5	112871385	112927227
REEP6_chr19_1486181_1502927	1/1	a0001	184	299	86	65	101	12	33	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	a0002	184	16	0	1	15	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	a0003	184	2	0	0	2	0	0	copy fasta	REEP6	chr19	1486181	1502927
REEP6_chr19_1486181_1502927	0/0	a0004	184	1	0	0	0	0	1	copy fasta	REEP6	chr19	1486181	1502927
REG1A_chr2_79115488_79128409	1/1	a0001	166	452	96	86	212	14	42	copy fasta	REG1A	chr2	79115488	79128409
REG1B_chr2_79080023_79092993	1/1	a0001	166	461	94	84	216	16	49	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	a0002	166	1	1	0	0	0	0	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	a0003	166	1	1	0	0	0	0	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	a0004	166	1	0	0	1	0	0	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	a0005	166	1	0	0	0	0	1	copy fasta	REG1B	chr2	79080023	79092993
REG1B_chr2_79080023_79092993	0/0	a0006	166	1	0	0	1	0	0	copy fasta	REG1B	chr2	79080023	79092993
REG3A_chr2_79152006_79164753	1/1	a0001	175	425	96	68	203	14	42	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	a0002	175	4	0	4	0	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	a0003	175	2	0	2	0	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	a0004	171	1	0	0	1	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	a0005	175	1	1	0	0	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	a0006	175	1	0	0	1	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	a0007	175	1	0	0	1	0	0	copy fasta	REG3A	chr2	79152006	79164753
REG3A_chr2_79152006_79164753	0/0	a0008	175	1	1	0	0	0	0	copy fasta	REG3A	chr2	79152006	79164753