JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
REG3G_chr2_79020702_79033501	1/1	a0001	175	433	70	68	227	18	48	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	a0002	175	11	11	0	0	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	a0003	175	9	9	0	0	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	a0004	175	6	3	3	0	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	a0005	175	2	0	0	2	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	a0006	175	1	1	0	0	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	a0007	175	1	0	1	0	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG3G_chr2_79020702_79033501	0/0	a0008	175	1	0	0	1	0	0	copy fasta	REG3G	chr2	79020702	79033501
REG4_chr1_119789017_119816460	1/1	a0001	158	449	88	81	212	18	48	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	a0002	158	10	9	1	0	0	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	a0003	92	1	1	0	0	0	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	a0004	158	1	1	0	0	0	0	copy fasta	REG4	chr1	119789017	119816460
REG4_chr1_119789017_119816460	0/0	a0005	158	1	1	0	0	0	0	copy fasta	REG4	chr1	119789017	119816460
RELA_chr11_65648601_65667916	1/1	a0001	551	401	98	66	179	18	38	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	a0002	551	2	0	2	0	0	0	copy fasta	RELA	chr11	65648601	65667916
RELA_chr11_65648601_65667916	0/0	a0003	551	1	0	0	1	0	0	copy fasta	RELA	chr11	65648601	65667916
RELB_chr19_44996464_45043192	1/1	a0001	579	381	96	74	151	12	46	copy fasta	RELB	chr19	44996464	45043192
RELB_chr19_44996464_45043192	0/0	a0002	579	1	0	0	1	0	0	copy fasta	RELB	chr19	44996464	45043192
RELCH_chr18_62182255_62315249	1/1	a0001	1216	333	86	54	139	13	39	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	a0002	1216	3	0	0	0	1	2	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	a0003	1216	1	0	1	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	a0004	1216	1	0	0	0	0	1	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	a0005	1216	1	0	1	0	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELCH_chr18_62182255_62315249	0/0	a0006	1216	1	0	0	1	0	0	copy fasta	RELCH	chr18	62182255	62315249
RELL1_chr4_37605634_37691376	1/1	a0001	271	318	78	64	120	15	39	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	a0002	271	2	0	0	1	0	1	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	a0003	271	2	2	0	0	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	a0004	271	1	0	0	0	1	0	copy fasta	RELL1	chr4	37605634	37691376
RELL1_chr4_37605634_37691376	0/0	a0005	271	1	0	0	1	0	0	copy fasta	RELL1	chr4	37605634	37691376
RELL2_chr5_141631997_141646064	1/0	a0001	303	277	44	51	148	7	26	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/1	a0002	303	82	44	14	7	6	10	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	a0003	303	58	8	13	28	1	8	copy fasta	RELL2	chr5	141631997	141646064
RELL2_chr5_141631997_141646064	0/0	a0004	303	1	0	0	1	0	0	copy fasta	RELL2	chr5	141631997	141646064
RELN_chr7_103466789_103994658	1/1	a0001	3460	115	35	21	52	0	5	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0002	3460	18	3	4	7	0	4	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0003	3460	7	0	0	7	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0004	3460	4	3	1	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0005	3460	3	3	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0006	3460	3	3	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0007	3460	3	0	0	3	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0008	3460	2	2	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0009	3460	2	2	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0010	3460	2	0	0	2	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0011	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0012	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0013	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0014	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0015	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0016	3460	1	0	0	1	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0017	3460	1	0	0	0	0	1	copy fasta	RELN	chr7	103466789	103994658