JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RELN_chr7_103466789_103994658	0/0	a0018	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0019	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0020	3460	1	0	0	1	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0021	3460	1	0	0	0	0	1	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0022	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0023	3460	1	0	0	1	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0024	3460	1	0	0	1	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0025	3460	1	0	0	0	0	1	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0026	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0027	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0028	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0029	3460	1	0	0	1	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0030	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0031	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0032	3460	1	0	0	1	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0033	3460	1	0	0	1	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0034	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELN_chr7_103466789_103994658	0/0	a0035	3460	1	1	0	0	0	0	copy fasta	RELN	chr7	103466789	103994658
RELT_chr11_73371399_73402474	1/1	a0001	430	326	88	52	130	18	36	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	a0002	430	6	6	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	a0003	430	2	2	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	a0004	430	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	a0005	430	1	0	1	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	a0006	430	1	0	1	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	a0007	430	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	a0008	430	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
RELT_chr11_73371399_73402474	0/0	a0009	430	1	1	0	0	0	0	copy fasta	RELT	chr11	73371399	73402474
REL_chr2_60876574_60936612	1/1	a0001	587	271	71	68	88	16	26	copy fasta	REL	chr2	60876574	60936612
REL_chr2_60876574_60936612	0/0	a0002	587	5	5	0	0	0	0	copy fasta	REL	chr2	60876574	60936612
REM1_chr20_31470288_31489895	1/0	a0001	298	179	13	50	81	12	22	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/1	a0002	298	151	68	28	34	6	14	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	a0003	298	3	0	0	3	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	a0004	298	2	0	0	2	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	a0005	298	2	0	0	2	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	a0006	298	1	0	0	0	0	1	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	a0007	298	1	1	0	0	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	a0008	298	1	0	0	0	0	1	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	a0009	298	1	0	0	1	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	a0010	298	1	1	0	0	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	a0011	298	1	0	0	1	0	0	copy fasta	REM1	chr20	31470288	31489895
REM1_chr20_31470288_31489895	0/0	a0012	298	1	1	0	0	0	0	copy fasta	REM1	chr20	31470288	31489895
REM2_chr14_22878222_22892678	1/1	a0001	340	349	81	73	147	7	39	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	a0002	340	35	14	8	9	1	3	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	a0003	340	2	2	0	0	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	a0004	340	2	0	0	2	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	a0005	340	1	1	0	0	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	a0006	340	1	1	0	0	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	a0007	340	1	1	0	0	0	0	copy fasta	REM2	chr14	22878222	22892678
REM2_chr14_22878222_22892678	0/0	a0008	340	1	0	1	0	0	0	copy fasta	REM2	chr14	22878222	22892678
RENBP_chrX_153930269_153949643	0/0	a0000	0	8	1	1	5	0	1	copy fasta	RENBP	chrX	153930269	153949643