JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RENBP_chrX_153930269_153949643	1/1	a0001	427	228	46	44	100	9	27	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0002	427	10	1	3	6	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0003	427	9	8	1	0	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0004	427	9	9	0	0	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0005	427	7	4	0	3	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0006	206	6	0	1	5	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0007	427	5	5	0	0	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0008	427	4	4	0	0	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0009	427	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0010	206	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0011	281	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0012	435	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0013	427	1	0	1	0	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0014	409	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0015	397	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0016	319	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0017	133	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0018	159	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
RENBP_chrX_153930269_153949643	0/0	a0019	58	1	0	0	1	0	0	copy fasta	RENBP	chrX	153930269	153949643
REN_chr1_204149819_204171337	0/0	a0000	0	1	1	0	0	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	1/1	a0001	406	417	85	76	197	12	45	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	a0002	406	9	9	0	0	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	a0003	406	2	2	0	0	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	a0004	406	1	0	0	0	0	1	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	a0005	234	1	0	0	1	0	0	copy fasta	REN	chr1	204149819	204171337
REN_chr1_204149819_204171337	0/0	a0006	406	1	1	0	0	0	0	copy fasta	REN	chr1	204149819	204171337
REP15_chr12_27691447_27702596	0/1	a0001	236	379	84	61	189	10	34	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	a0002	236	46	0	12	24	4	6	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	1/0	a0003	236	8	6	1	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	a0004	236	7	0	4	3	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	a0005	236	1	1	0	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REP15_chr12_27691447_27702596	0/0	a0006	236	1	1	0	0	0	0	copy fasta	REP15	chr12	27691447	27702596
REPIN1_chr7_150363822_150379039	1/0	a0001	624	215	44	54	73	15	28	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/1	a0002	624	105	2	17	71	3	11	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	a0003	620	32	13	3	14	0	2	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	a0004	620	25	18	2	3	0	2	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	a0005	624	10	10	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	a0006	624	3	3	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	a0007	624	2	2	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	a0008	620	2	2	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	a0009	620	2	2	0	0	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	a0010	624	1	0	0	1	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	a0011	624	1	0	0	0	0	1	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	a0012	624	1	0	0	1	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPIN1_chr7_150363822_150379039	0/0	a0013	628	1	0	0	1	0	0	copy fasta	REPIN1	chr7	150363822	150379039
REPS1_chr6_138898493_138993253	1/1	a0001	796	348	73	54	172	12	35	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	a0002	796	28	14	3	10	0	1	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	a0003	796	3	2	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	a0004	796	2	1	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	a0005	796	2	2	0	0	0	0	copy fasta	REPS1	chr6	138898493	138993253