JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
REPS1_chr6_138898493_138993253	0/0	a0006	796	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	a0007	796	1	0	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	a0008	796	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	a0009	796	1	0	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	a0010	796	1	0	1	0	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	a0011	796	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS1_chr6_138898493_138993253	0/0	a0012	796	1	0	0	1	0	0	copy fasta	REPS1	chr6	138898493	138993253
REPS2_chrX_16941658_17158272	1/1	a0001	660	159	38	26	60	7	26	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	a0002	660	1	0	0	0	0	1	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	a0003	326	1	0	0	1	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	a0004	527	1	0	0	0	0	1	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	a0005	495	1	0	0	1	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	a0006	326	1	0	1	0	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	a0007	326	1	0	0	1	0	0	copy fasta	REPS2	chrX	16941658	17158272
REPS2_chrX_16941658_17158272	0/0	a0008	334	1	0	0	1	0	0	copy fasta	REPS2	chrX	16941658	17158272
RER1_chr1_2386841_2410436	1/1	a0001	196	352	81	72	135	18	44	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	a0002	196	1	0	0	1	0	0	copy fasta	RER1	chr1	2386841	2410436
RER1_chr1_2386841_2410436	0/0	a0003	196	1	1	0	0	0	0	copy fasta	RER1	chr1	2386841	2410436
RERE_chr1_8347404_8822640	1/1	a0001	1566	183	62	31	51	10	27	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	a0002	1564	8	0	2	6	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	a0003	1568	4	4	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	a0004	1566	2	2	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	a0005	1564	2	2	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	a0006	1566	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	a0007	1566	1	1	0	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	a0008	1566	1	0	0	0	0	1	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	a0009	1566	1	0	1	0	0	0	copy fasta	RERE	chr1	8347404	8822640
RERE_chr1_8347404_8822640	0/0	a0010	1564	1	0	0	1	0	0	copy fasta	RERE	chr1	8347404	8822640
RERGL_chr12_18075869_18095193	1/1	a0001	204	370	84	64	172	15	33	copy fasta	RERGL	chr12	18075869	18095193
RERGL_chr12_18075869_18095193	0/0	a0002	204	26	8	9	1	1	7	copy fasta	RERGL	chr12	18075869	18095193
RERGL_chr12_18075869_18095193	0/0	a0003	204	5	4	1	0	0	0	copy fasta	RERGL	chr12	18075869	18095193
RERGL_chr12_18075869_18095193	0/0	a0004	204	1	0	0	1	0	0	copy fasta	RERGL	chr12	18075869	18095193
RERG_chr12_15102783_15226417	1/1	a0001	199	298	82	46	126	10	32	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/0	a0002	199	1	1	0	0	0	0	copy fasta	RERG	chr12	15102783	15226417
RERG_chr12_15102783_15226417	0/0	a0003	199	1	1	0	0	0	0	copy fasta	RERG	chr12	15102783	15226417
RESF1_chr12_31954415_31998107	0/0	a0001	1747	67	0	11	42	4	10	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/1	a0002	1747	59	29	11	11	3	4	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0003	1747	52	6	9	24	3	10	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0004	1747	42	10	8	20	1	3	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	1/0	a0005	1747	35	0	2	30	0	2	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0006	1747	34	11	8	6	3	6	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0007	1747	28	1	10	15	1	1	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0008	1747	24	0	4	20	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0009	1747	20	0	1	19	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0010	1747	13	1	7	1	3	1	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0011	1747	10	8	2	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0012	1747	9	0	0	9	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0013	1747	8	0	1	7	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0014	1747	6	6	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0015	1747	6	6	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107