JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RESF1_chr12_31954415_31998107	0/0	a0016	1747	4	4	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0017	1747	4	4	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0018	1747	4	0	0	0	0	4	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0019	1747	3	0	0	3	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0020	1747	2	0	0	2	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0021	1747	2	2	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0022	1747	2	0	0	2	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0023	1747	2	0	0	2	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0024	1747	2	2	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0025	1747	1	0	0	1	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0026	1747	1	0	1	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0027	1747	1	0	0	0	0	1	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0028	1747	1	0	0	0	0	1	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0029	1747	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0030	1747	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0031	1747	1	0	1	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0032	1747	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0033	1747	1	0	0	0	0	1	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0034	1747	1	0	0	1	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0035	1747	1	0	0	1	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0036	1747	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0037	1747	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESF1_chr12_31954415_31998107	0/0	a0038	1747	1	1	0	0	0	0	copy fasta	RESF1	chr12	31954415	31998107
RESP18_chr2_219322407_219338177	1/1	a0001	228	229	2	52	138	10	25	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	a0002	228	143	76	27	17	6	17	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	a0003	228	38	11	0	23	0	4	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	a0004	228	5	5	0	0	0	0	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	a0005	228	2	0	0	0	0	2	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	a0006	228	1	1	0	0	0	0	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	a0007	52	1	0	1	0	0	0	copy fasta	RESP18	chr2	219322407	219338177
RESP18_chr2_219322407_219338177	0/0	a0008	5	1	1	0	0	0	0	copy fasta	RESP18	chr2	219322407	219338177
REST_chr4_56902900_56940844	1/1	a0001	1097	158	35	34	52	7	28	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	a0002	1097	135	27	19	74	3	12	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	a0003	1097	67	13	16	37	0	1	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	a0004	1081	32	10	5	13	2	2	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	a0005	1097	5	0	0	5	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	a0006	1097	2	0	2	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	a0007	1097	2	0	0	2	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	a0008	1097	2	2	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	a0009	1097	1	0	0	1	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	a0010	1097	1	0	0	1	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	a0011	1097	1	1	0	0	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	a0012	1097	1	0	0	1	0	0	copy fasta	REST	chr4	56902900	56940844
REST_chr4_56902900_56940844	0/0	a0013	1097	1	0	0	0	0	1	copy fasta	REST	chr4	56902900	56940844
RETNLB_chr3_108750638_108762410	1/0	a0001	111	360	61	59	202	10	27	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/0	a0002	111	48	11	11	7	2	17	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/0	a0003	111	24	21	3	0	0	0	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/1	a0004	13	19	5	3	0	4	6	copy fasta	RETNLB	chr3	108750638	108762410
RETNLB_chr3_108750638_108762410	0/0	a0005	111	1	0	0	1	0	0	copy fasta	RETNLB	chr3	108750638	108762410
RETN_chr19_7664049_7675455	1/1	a0001	108	456	97	82	207	18	50	copy fasta	RETN	chr19	7664049	7675455