JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RETN_chr19_7664049_7675455	0/0	a0002	108	1	0	0	1	0	0	copy fasta	RETN	chr19	7664049	7675455
RETN_chr19_7664049_7675455	0/0	a0003	108	1	1	0	0	0	0	copy fasta	RETN	chr19	7664049	7675455
RETREG1_chr5_16468053_16621997	1/1	a0001	497	268	67	46	107	10	36	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	a0002	497	18	16	2	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	a0003	497	6	4	2	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	a0004	497	1	1	0	0	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG1_chr5_16468053_16621997	0/0	a0005	497	1	0	0	1	0	0	copy fasta	RETREG1	chr5	16468053	16621997
RETREG2_chr2_219173275_219190475	1/0	a0001	543	219	60	37	95	4	22	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/1	a0002	543	138	30	19	61	8	19	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	a0003	543	59	1	7	42	4	5	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	a0004	543	4	0	3	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	a0005	543	4	0	4	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	a0006	545	3	3	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	a0007	543	1	0	0	1	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	a0008	543	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG2_chr2_219173275_219190475	0/0	a0009	543	1	1	0	0	0	0	copy fasta	RETREG2	chr2	219173275	219190475
RETREG3_chr17_42574515_42614374	1/1	a0001	466	353	88	72	136	11	44	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	a0002	466	3	0	0	3	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	a0003	466	1	1	0	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	a0004	466	1	1	0	0	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	a0005	466	1	0	0	0	1	0	copy fasta	RETREG3	chr17	42574515	42614374
RETREG3_chr17_42574515_42614374	0/0	a0006	466	1	0	0	1	0	0	copy fasta	RETREG3	chr17	42574515	42614374
RETSAT_chr2_85336955_85359528	1/1	a0001	610	345	89	65	132	14	43	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	a0002	610	22	0	3	19	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	a0003	610	3	0	0	3	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	a0004	610	2	2	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	a0005	610	2	1	1	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	a0006	610	2	0	0	0	2	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	a0007	610	2	2	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	a0008	610	1	0	0	1	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	a0009	610	1	0	0	1	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	a0010	610	1	1	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	a0011	610	1	0	0	0	0	1	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	a0012	610	1	1	0	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RETSAT_chr2_85336955_85359528	0/0	a0013	610	1	0	1	0	0	0	copy fasta	RETSAT	chr2	85336955	85359528
RET_chr10_43072069_43135351	1/1	a0001	1114	310	80	58	128	9	33	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	a0002	1114	52	10	15	13	6	8	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	a0003	1114	5	1	1	0	2	1	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	a0004	1114	4	0	0	4	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	a0005	1114	2	0	0	2	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	a0006	1114	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	a0007	1114	1	0	0	0	1	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	a0008	1114	1	0	1	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	a0009	1114	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	a0010	1114	1	0	1	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	a0011	1114	1	0	0	1	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	a0012	1114	1	1	0	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	a0013	1114	1	1	0	0	0	0	copy fasta	RET	chr10	43072069	43135351
RET_chr10_43072069_43135351	0/0	a0014	1114	1	1	0	0	0	0	copy fasta	RET	chr10	43072069	43135351
REV1_chr2_99395477_99495017	0/0	a0001	1251	98	18	29	44	2	5	copy fasta	REV1	chr2	99395477	99495017