JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATG9B_chr7_151010151_151029494	0/0	a0006	923	5	4	1	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0007	924	4	4	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0008	924	3	3	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0009	924	3	0	3	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0010	733	2	0	0	2	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0011	924	2	2	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0012	598	2	0	0	2	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0013	924	2	0	2	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0014	924	2	0	0	2	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0015	923	2	2	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0016	923	2	2	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0017	924	2	1	1	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0018	924	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0019	924	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0020	924	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0021	924	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0022	598	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0023	924	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0024	924	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0025	924	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0026	924	1	0	0	0	0	1	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0027	924	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0028	924	1	0	0	0	0	1	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0029	930	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0030	924	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0031	924	1	0	0	0	0	1	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0032	924	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0033	924	1	0	0	1	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0034	923	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0035	671	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATG9B_chr7_151010151_151029494	0/0	a0036	923	1	1	0	0	0	0	copy fasta	ATG9B	chr7	151010151	151029494
ATIC_chr2_215307059_215354764	1/1	a0001	592	285	78	50	121	6	28	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	a0002	592	76	2	15	37	4	18	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	a0003	592	7	7	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	a0004	592	5	4	1	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	a0005	592	2	2	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	a0006	592	1	0	0	1	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	a0007	592	1	0	0	1	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	a0008	592	1	1	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	a0009	592	1	1	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	a0010	592	1	1	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	a0011	592	1	1	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATIC_chr2_215307059_215354764	0/0	a0012	592	1	1	0	0	0	0	copy fasta	ATIC	chr2	215307059	215354764
ATL1_chr14_50555145_50638045	1/1	a0001	558	319	92	66	125	8	26	copy fasta	ATL1	chr14	50555145	50638045
ATL1_chr14_50555145_50638045	0/0	a0002	558	1	0	0	1	0	0	copy fasta	ATL1	chr14	50555145	50638045
ATL2_chr2_38288954_38382273	0/0	a0001	583	126	55	21	33	3	14	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	1/1	a0002	583	82	13	16	35	7	9	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	a0003	583	23	21	2	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	a0004	583	2	2	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	a0005	583	1	1	0	0	0	0	copy fasta	ATL2	chr2	38288954	38382273