JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
REV1_chr2_99395477_99495017	1/1	a0002	1251	97	20	17	47	1	10	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	a0003	1251	68	27	16	13	4	8	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	a0004	1251	42	22	2	7	2	9	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	a0005	1251	10	0	10	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	a0006	1251	2	0	0	2	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	a0007	1251	1	0	1	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	a0008	1251	1	1	0	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	a0009	1251	1	0	1	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	a0010	1245	1	0	0	1	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	a0011	1251	1	1	0	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	a0012	1251	1	0	0	0	1	0	copy fasta	REV1	chr2	99395477	99495017
REV1_chr2_99395477_99495017	0/0	a0013	1251	1	1	0	0	0	0	copy fasta	REV1	chr2	99395477	99495017
REV3L_chr6_111294033_111488218	1/0	a0001	3130	106	26	11	53	4	11	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0002	3130	105	15	30	45	3	12	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/1	a0003	3130	19	2	12	0	1	3	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0004	3130	13	12	1	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0005	3130	10	4	4	0	0	2	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0006	3130	10	0	5	4	0	1	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0007	3130	5	5	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0008	3130	4	0	2	0	2	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0009	3130	4	4	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0010	3130	3	0	0	0	0	3	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0011	3130	2	0	0	0	0	2	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0012	3130	1	0	1	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0013	3130	1	0	0	1	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0014	3130	1	1	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0015	3130	1	1	0	0	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0016	3130	1	0	0	1	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0017	3130	1	0	0	1	0	0	copy fasta	REV3L	chr6	111294033	111488218
REV3L_chr6_111294033_111488218	0/0	a0018	3130	1	0	0	1	0	0	copy fasta	REV3L	chr6	111294033	111488218
REX1BD_chr19_18583798_18597337	1/1	a0001	201	420	92	73	198	10	45	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	a0002	201	2	2	0	0	0	0	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	a0003	19	1	0	1	0	0	0	copy fasta	REX1BD	chr19	18583798	18597337
REX1BD_chr19_18583798_18597337	0/0	a0004	201	1	0	0	0	0	1	copy fasta	REX1BD	chr19	18583798	18597337
REXO1_chr19_1810248_1853483	0/0	a0001	1221	97	11	27	41	9	9	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	1/1	a0002	1221	72	14	12	31	4	9	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0003	1220	52	2	17	31	0	2	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0004	1220	26	0	4	15	0	7	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0005	1221	16	4	1	10	1	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0006	1221	13	4	0	8	0	1	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0007	1221	13	12	0	0	0	1	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0008	1221	11	7	1	1	0	2	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0009	1221	8	4	0	2	0	2	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0010	1221	7	0	0	7	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0011	1222	6	6	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0012	1221	5	5	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0013	1221	5	1	0	3	0	1	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0014	1222	4	4	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0015	1221	4	4	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0016	1222	4	3	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483