JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
REXO1_chr19_1810248_1853483	0/0	a0017	1221	4	0	0	4	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0018	1217	3	3	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0019	1221	2	0	0	0	2	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0020	1221	2	2	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0021	1223	2	0	2	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0022	1221	2	0	0	2	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0023	1221	2	0	1	0	0	1	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0024	1220	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0025	1221	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0026	1221	1	0	1	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0027	1221	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0028	1221	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0029	1220	1	0	0	0	0	1	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0030	1222	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0031	1222	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0032	1221	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0033	1225	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0034	1221	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0035	1221	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0036	1220	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0037	1220	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0038	1225	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0039	1222	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0040	1221	1	0	1	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0041	1221	1	1	0	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0042	1221	1	0	1	0	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO1_chr19_1810248_1853483	0/0	a0043	1221	1	0	0	1	0	0	copy fasta	REXO1	chr19	1810248	1853483
REXO2_chr11_114434467_114455279	1/1	a0001	237	436	95	80	205	14	40	copy fasta	REXO2	chr11	114434467	114455279
REXO2_chr11_114434467_114455279	0/0	a0002	237	1	1	0	0	0	0	copy fasta	REXO2	chr11	114434467	114455279
REXO2_chr11_114434467_114455279	0/0	a0003	237	1	0	0	1	0	0	copy fasta	REXO2	chr11	114434467	114455279
REXO4_chr9_133401062_133423010	1/0	a0001	422	400	79	73	191	16	40	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	a0002	422	14	14	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	a0003	422	9	0	2	5	0	2	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	a0004	422	2	2	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/1	a0005	422	1	0	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	a0006	422	1	0	1	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO4_chr9_133401062_133423010	0/0	a0007	422	1	1	0	0	0	0	copy fasta	REXO4	chr9	133401062	133423010
REXO5_chr16_20801527_20854665	1/1	a0001	774	370	86	58	172	16	36	copy fasta	REXO5	chr16	20801527	20854665
REXO5_chr16_20801527_20854665	0/0	a0002	774	1	0	1	0	0	0	copy fasta	REXO5	chr16	20801527	20854665
REXO5_chr16_20801527_20854665	0/0	a0003	774	1	0	1	0	0	0	copy fasta	REXO5	chr16	20801527	20854665
RFC1_chr4_39282456_39371362	1/1	a0001	1147	261	70	52	103	8	26	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	a0002	1147	6	6	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	a0003	1147	5	5	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	a0004	1147	2	2	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	a0005	75	1	0	0	1	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC1_chr4_39282456_39371362	0/0	a0006	1147	1	1	0	0	0	0	copy fasta	RFC1	chr4	39282456	39371362
RFC2_chr7_74226502_74259399	1/1	a0001	354	323	88	66	124	14	29	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	a0002	354	2	1	0	0	0	1	copy fasta	RFC2	chr7	74226502	74259399
RFC2_chr7_74226502_74259399	0/0	a0003	354	1	1	0	0	0	0	copy fasta	RFC2	chr7	74226502	74259399
RFC3_chr13_33813149_33842500	1/1	a0001	356	413	90	70	205	10	36	copy fasta	RFC3	chr13	33813149	33842500