JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RFC3_chr13_33813149_33842500	0/0	a0002	356	3	0	0	3	0	0	copy fasta	RFC3	chr13	33813149	33842500
RFC4_chr3_186784900_186811482	1/1	a0001	363	422	88	71	201	18	42	copy fasta	RFC4	chr3	186784900	186811482
RFC4_chr3_186784900_186811482	0/0	a0002	363	4	0	0	4	0	0	copy fasta	RFC4	chr3	186784900	186811482
RFC4_chr3_186784900_186811482	0/0	a0003	363	3	3	0	0	0	0	copy fasta	RFC4	chr3	186784900	186811482
RFC4_chr3_186784900_186811482	0/0	a0004	363	1	0	0	1	0	0	copy fasta	RFC4	chr3	186784900	186811482
RFC4_chr3_186784900_186811482	0/0	a0005	363	1	0	1	0	0	0	copy fasta	RFC4	chr3	186784900	186811482
RFC4_chr3_186784900_186811482	0/0	a0006	363	1	1	0	0	0	0	copy fasta	RFC4	chr3	186784900	186811482
RFC5_chr12_118011703_118037234	1/1	a0001	340	437	98	74	201	18	44	copy fasta	RFC5	chr12	118011703	118037234
RFC5_chr12_118011703_118037234	0/0	a0002	340	1	0	0	1	0	0	copy fasta	RFC5	chr12	118011703	118037234
RFESD_chr5_95641777_95663082	1/1	a0001	210	387	81	72	175	17	40	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	a0002	210	17	6	4	0	1	6	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	a0003	210	3	0	0	3	0	0	copy fasta	RFESD	chr5	95641777	95663082
RFESD_chr5_95641777_95663082	0/0	a0004	210	3	3	0	0	0	0	copy fasta	RFESD	chr5	95641777	95663082
RFFL_chr17_35000990_35068707	1/1	a0001	363	361	86	60	161	12	40	copy fasta	RFFL	chr17	35000990	35068707
RFFL_chr17_35000990_35068707	0/0	a0002	363	11	4	0	7	0	0	copy fasta	RFFL	chr17	35000990	35068707
RFK_chr9_76380526_76399426	1/1	a0001	155	406	93	72	179	18	42	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	a0002	155	1	0	0	1	0	0	copy fasta	RFK	chr9	76380526	76399426
RFK_chr9_76380526_76399426	0/0	a0003	155	1	1	0	0	0	0	copy fasta	RFK	chr9	76380526	76399426
RFLNA_chr12_124290093_124321024	1/1	a0001	216	378	81	71	167	13	44	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	a0002	216	6	4	1	0	1	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	a0003	216	3	3	0	0	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFLNA_chr12_124290093_124321024	0/0	a0004	216	1	0	0	1	0	0	copy fasta	RFLNA	chr12	124290093	124321024
RFNG_chr17_82042902_82056811	0/0	a0001	331	226	54	58	78	11	25	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	1/1	a0002	331	221	28	28	133	7	23	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	a0003	331	7	7	0	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	a0004	331	4	4	0	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	a0005	331	2	0	0	1	0	1	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	a0006	331	1	1	0	0	0	0	copy fasta	RFNG	chr17	82042902	82056811
RFNG_chr17_82042902_82056811	0/0	a0007	325	1	0	0	0	0	1	copy fasta	RFNG	chr17	82042902	82056811
RFPL1_chr22_29433583_29447455	1/0	a0001	317	302	55	41	167	6	32	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/1	a0002	316	82	3	23	30	11	14	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	a0003	242	31	16	5	6	1	3	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	a0004	316	13	8	3	2	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	a0005	242	3	2	1	0	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	a0006	317	3	0	0	2	0	1	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	a0007	147	3	3	0	0	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	a0008	317	3	3	0	0	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	a0009	317	2	1	1	0	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	a0010	317	1	0	0	1	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL1_chr22_29433583_29447455	0/0	a0011	181	1	1	0	0	0	0	copy fasta	RFPL1	chr22	29433583	29447455
RFPL2_chr22_32185438_32210073	1/1	a0001	378	206	9	36	130	6	23	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0002	378	72	28	22	6	6	10	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0003	378	48	11	6	21	1	9	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0004	378	20	8	9	2	0	1	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0005	378	17	15	2	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0006	378	14	12	0	1	0	1	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0007	378	5	5	0	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0008	378	3	3	0	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0009	378	2	2	0	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0010	378	1	0	1	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073