JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RFPL2_chr22_32185438_32210073	0/0	a0011	378	1	1	0	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0012	378	1	1	0	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0013	378	1	0	0	0	1	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0014	378	1	1	0	0	0	0	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0015	378	1	0	0	0	0	1	copy fasta	RFPL2	chr22	32185438	32210073
RFPL2_chr22_32185438_32210073	0/0	a0016	378	1	0	0	0	0	1	copy fasta	RFPL2	chr22	32185438	32210073
RFPL3_chr22_32352867_32366161	1/0	a0001	317	275	58	67	96	18	35	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	a0002	317	94	3	5	78	0	8	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/1	a0003	317	38	13	10	9	0	5	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	a0004	317	7	5	2	0	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	a0005	317	5	5	0	0	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	a0006	317	1	0	0	1	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	a0007	317	1	1	0	0	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	a0008	317	1	0	0	1	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	a0009	317	1	0	0	1	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL3_chr22_32352867_32366161	0/0	a0010	317	1	1	0	0	0	0	copy fasta	RFPL3	chr22	32352867	32366161
RFPL4AL1_chr19_55764118_55778420	0/0	a0000	0	2	0	1	0	1	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0001	287	205	68	26	81	5	25	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0002	287	114	8	31	62	6	7	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0003	287	40	1	5	32	1	1	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	1/0	a0004	287	31	0	0	30	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0005	287	31	5	14	5	2	5	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0006	287	30	8	0	18	0	4	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0007	287	5	0	0	4	0	1	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0008	287	4	4	0	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0009	287	3	0	0	3	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0010	287	3	0	0	0	0	3	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0011	287	2	0	0	2	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0012	287	1	0	0	1	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0013	287	1	1	0	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0014	287	1	0	0	0	1	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0015	287	1	0	0	1	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0016	287	1	1	0	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0017	287	1	0	1	0	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4AL1_chr19_55764118_55778420	0/0	a0018	287	1	0	0	1	0	0	copy fasta	RFPL4AL1	chr19	55764118	55778420
RFPL4A_chr19_55754097_55768421	0/0	a0000	0	5	0	0	2	0	3	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	1/1	a0001	287	330	45	56	179	14	34	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	a0002	287	31	7	14	3	3	4	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	a0003	287	28	0	0	28	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	a0004	287	21	16	2	1	1	1	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	a0005	287	15	2	0	8	0	5	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	a0006	287	12	12	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	a0007	287	6	0	5	0	0	1	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	a0008	287	4	1	2	1	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	a0009	287	3	3	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	a0010	287	2	2	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	a0011	287	1	0	0	1	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	a0012	287	1	1	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	a0013	287	1	1	0	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4A_chr19_55754097_55768421	0/0	a0014	287	1	0	1	0	0	0	copy fasta	RFPL4A	chr19	55754097	55768421