JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RFPL4A_chr19_55754097_55768421	0/0	a0015	287	1	0	0	1	0	0	copy fasta	RFPL4A	chr19	55754097	55768421
RFPL4B_chr6_112342330_112356294	1/1	a0001	263	404	77	73	201	14	37	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	a0002	263	52	19	13	9	2	9	copy fasta	RFPL4B	chr6	112342330	112356294
RFPL4B_chr6_112342330_112356294	0/0	a0003	263	2	2	0	0	0	0	copy fasta	RFPL4B	chr6	112342330	112356294
RFT1_chr3_53083483_53135435	1/1	a0001	541	300	72	66	107	12	41	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	a0002	541	18	17	1	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	a0003	541	1	0	0	1	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	a0004	541	1	0	1	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	a0005	541	1	0	0	1	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	a0006	541	1	0	0	1	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	a0007	371	1	0	0	0	0	1	copy fasta	RFT1	chr3	53083483	53135435
RFT1_chr3_53083483_53135435	0/0	a0008	541	1	1	0	0	0	0	copy fasta	RFT1	chr3	53083483	53135435
RFTN1_chr3_16310845_16518699	1/1	a0001	578	202	25	47	103	4	21	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	a0002	578	50	39	8	0	2	1	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	a0003	578	7	1	1	1	2	2	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	a0004	578	4	0	0	4	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	a0005	578	1	1	0	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	a0006	578	1	0	1	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	a0007	578	1	0	1	0	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	a0008	578	1	0	0	1	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN1_chr3_16310845_16518699	0/0	a0009	578	1	0	0	1	0	0	copy fasta	RFTN1	chr3	16310845	16518699
RFTN2_chr2_197563224_197680587	1/1	a0001	501	307	80	60	136	9	20	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	a0002	501	2	0	2	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	a0003	501	1	0	1	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	a0004	501	1	0	0	0	1	0	copy fasta	RFTN2	chr2	197563224	197680587
RFTN2_chr2_197563224_197680587	0/0	a0005	501	1	0	1	0	0	0	copy fasta	RFTN2	chr2	197563224	197680587
RFWD3_chr16_74616399_74671877	0/0	a0001	774	154	27	30	70	3	24	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	a0002	774	149	40	21	71	10	7	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	1/1	a0003	774	92	17	21	43	3	6	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	a0004	774	5	0	3	0	0	2	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	a0005	774	2	0	0	2	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	a0006	774	2	0	0	0	0	2	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	a0007	774	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	a0008	774	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	a0009	774	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	a0010	774	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	a0011	774	1	0	0	1	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	a0012	774	1	0	0	0	0	1	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	a0013	774	1	1	0	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFWD3_chr16_74616399_74671877	0/0	a0014	774	1	0	1	0	0	0	copy fasta	RFWD3	chr16	74616399	74671877
RFX1_chr19_13956530_14011320	0/1	a0001	979	160	65	29	41	10	14	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	1/0	a0002	979	97	11	19	39	4	23	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	a0003	106	11	3	2	6	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	a0004	979	4	4	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	a0005	979	2	2	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	a0006	979	2	2	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	a0007	979	1	0	0	1	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	a0008	979	1	0	0	0	0	1	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	a0009	979	1	1	0	0	0	0	copy fasta	RFX1	chr19	13956530	14011320
RFX1_chr19_13956530_14011320	0/0	a0010	979	1	0	0	1	0	0	copy fasta	RFX1	chr19	13956530	14011320