JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RFX2_chr19_5988164_6115500	1/1	a0001	723	222	81	44	60	6	29	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	a0002	723	70	10	15	29	4	12	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	a0003	723	9	0	0	9	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	a0004	723	2	2	0	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	a0005	723	1	0	0	0	0	1	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	a0006	723	1	1	0	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	a0007	723	1	0	1	0	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	a0008	723	1	0	0	1	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX2_chr19_5988164_6115500	0/0	a0009	723	1	0	0	1	0	0	copy fasta	RFX2	chr19	5988164	6115500
RFX3_chr9_3213297_3531001	1/1	a0001	749	195	78	34	67	2	12	copy fasta	RFX3	chr9	3213297	3531001
RFX3_chr9_3213297_3531001	0/0	a0002	749	1	0	0	1	0	0	copy fasta	RFX3	chr9	3213297	3531001
RFX4_chr12_106578004_106767803	1/1	a0001	735	292	84	63	95	12	36	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	a0002	735	1	0	0	1	0	0	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	a0003	735	1	1	0	0	0	0	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	a0004	735	1	0	1	0	0	0	copy fasta	RFX4	chr12	106578004	106767803
RFX4_chr12_106578004_106767803	0/0	a0005	735	1	1	0	0	0	0	copy fasta	RFX4	chr12	106578004	106767803
RFX5_chr1_151335640_151352252	1/1	a0001	616	381	78	56	186	17	42	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	a0002	616	12	0	7	0	1	4	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	a0003	616	8	8	0	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	a0004	616	3	3	0	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	a0005	616	2	0	2	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	a0006	616	1	1	0	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX5_chr1_151335640_151352252	0/0	a0007	616	1	0	1	0	0	0	copy fasta	RFX5	chr1	151335640	151352252
RFX6_chr6_116872242_116937161	1/1	a0001	928	346	78	53	157	16	40	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	a0002	928	11	10	1	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	a0003	928	5	4	1	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	a0004	928	4	0	4	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	a0005	928	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	a0006	928	1	0	0	1	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	a0007	928	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	a0008	928	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	a0009	928	1	1	0	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX6_chr6_116872242_116937161	0/0	a0010	928	1	0	1	0	0	0	copy fasta	RFX6	chr6	116872242	116937161
RFX7_chr15_56082280_56248879	1/1	a0001	1460	336	85	63	147	14	25	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	a0002	1460	8	0	3	5	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	a0003	1460	6	0	1	5	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	a0004	1460	5	0	0	5	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	a0005	1460	1	0	0	1	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	a0006	1460	1	0	0	1	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	a0007	1460	1	0	1	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	a0008	1460	1	0	0	0	0	1	copy fasta	RFX7	chr15	56082280	56248879
RFX7_chr15_56082280_56248879	0/0	a0009	1460	1	1	0	0	0	0	copy fasta	RFX7	chr15	56082280	56248879
RFX8_chr2_101392359_101480112	0/1	a0001	473	151	31	33	64	7	15	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0002	473	116	25	21	52	7	11	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	1/0	a0003	473	43	12	10	20	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0004	473	6	0	2	4	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0005	473	5	5	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0006	473	3	3	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0007	473	3	3	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0008	472	3	2	1	0	0	0	copy fasta	RFX8	chr2	101392359	101480112