JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RFX8_chr2_101392359_101480112	0/0	a0009	473	3	3	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0010	473	3	2	0	1	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0011	473	2	2	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0012	473	2	0	0	0	0	2	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0013	473	2	0	0	0	0	2	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0014	473	2	2	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0015	473	2	1	1	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0016	473	1	1	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0017	473	1	1	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0018	473	1	0	0	1	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0019	473	1	0	0	1	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0020	473	1	0	0	1	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFX8_chr2_101392359_101480112	0/0	a0021	473	1	1	0	0	0	0	copy fasta	RFX8	chr2	101392359	101480112
RFXANK_chr19_19187258_19206866	1/1	a0001	260	369	94	63	154	15	41	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	a0002	260	37	0	0	37	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	a0003	260	21	0	12	5	1	3	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	a0004	260	2	0	0	2	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	a0005	260	2	2	0	0	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXANK_chr19_19187258_19206866	0/0	a0006	260	1	0	1	0	0	0	copy fasta	RFXANK	chr19	19187258	19206866
RFXAP_chr13_36814222_36834104	1/1	a0001	272	426	90	67	204	16	47	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	a0002	272	2	0	1	0	0	1	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	a0003	272	1	0	0	1	0	0	copy fasta	RFXAP	chr13	36814222	36834104
RFXAP_chr13_36814222_36834104	0/0	a0004	272	1	0	0	1	0	0	copy fasta	RFXAP	chr13	36814222	36834104
RGCC_chr13_41452550_41475871	1/1	a0001	137	448	92	84	212	16	42	copy fasta	RGCC	chr13	41452550	41475871
RGL1_chr1_183800120_183933532	1/1	a0001	768	293	83	66	103	13	26	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	a0002	768	1	0	0	1	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	a0003	768	1	0	0	0	1	0	copy fasta	RGL1	chr1	183800120	183933532
RGL1_chr1_183800120_183933532	0/0	a0004	768	1	1	0	0	0	0	copy fasta	RGL1	chr1	183800120	183933532
RGL2_chr6_33286654_33303942	0/1	a0001	777	382	94	73	164	16	34	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	a0002	777	4	0	3	1	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	a0003	777	1	0	0	1	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	a0004	777	1	0	0	1	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	a0005	777	1	1	0	0	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	a0006	777	1	0	0	1	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	a0007	777	1	0	0	1	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	a0008	777	1	0	0	1	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL2_chr6_33286654_33303942	0/0	a0009	777	1	1	0	0	0	0	copy fasta	RGL2	chr6	33286654	33303942
RGL3_chr19_11389060_11424314	0/0	a0001	710	116	52	17	35	5	7	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	1/1	a0002	710	89	22	21	24	7	13	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0003	710	50	0	6	39	3	2	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0004	710	46	6	10	27	0	3	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0005	710	36	0	7	24	0	5	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0006	710	32	10	1	21	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0007	710	12	1	2	7	1	1	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0008	710	8	2	1	1	0	4	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0009	710	2	0	0	0	0	2	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0010	710	1	0	1	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0011	710	1	0	0	0	0	1	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0012	710	1	0	0	1	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0013	710	1	0	0	1	0	0	copy fasta	RGL3	chr19	11389060	11424314