JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RGL3_chr19_11389060_11424314	0/0	a0014	710	1	0	0	1	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0015	710	1	0	1	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0016	710	1	1	0	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0017	710	1	0	0	1	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0018	710	1	0	0	1	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0019	710	1	0	0	1	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL3_chr19_11389060_11424314	0/0	a0020	710	1	0	1	0	0	0	copy fasta	RGL3	chr19	11389060	11424314
RGL4_chr22_23686013_23704168	0/1	a0001	473	214	35	41	109	6	22	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	1/0	a0002	473	105	1	18	62	9	14	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	a0003	473	41	15	12	9	1	4	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	a0004	473	31	29	2	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	a0005	473	13	2	0	10	0	1	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	a0006	473	6	4	2	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	a0007	473	5	4	1	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	a0008	473	3	0	0	3	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	a0009	473	1	1	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	a0010	473	1	0	0	0	0	1	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	a0011	473	1	0	0	1	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	a0012	473	1	0	1	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	a0013	473	1	1	0	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGL4_chr22_23686013_23704168	0/0	a0014	473	1	0	1	0	0	0	copy fasta	RGL4	chr22	23686013	23704168
RGMA_chr15_93030271_93094211	1/1	a0001	450	321	73	58	139	13	36	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	a0002	450	77	26	17	21	3	10	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	a0003	450	12	0	6	6	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	a0004	450	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	a0005	450	1	0	1	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	a0006	450	1	1	0	0	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMA_chr15_93030271_93094211	0/0	a0007	450	1	0	0	1	0	0	copy fasta	RGMA	chr15	93030271	93094211
RGMB_chr5_98768663_98801494	0/1	a0001	437	364	93	70	147	12	41	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	1/0	a0002	437	4	0	3	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	a0003	437	3	3	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	a0004	437	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	a0005	437	1	0	0	0	0	1	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	a0006	437	1	1	0	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	a0007	437	1	0	1	0	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGMB_chr5_98768663_98801494	0/0	a0008	58	1	0	0	1	0	0	copy fasta	RGMB	chr5	98768663	98801494
RGN_chrX_47073443_47098313	1/1	a0001	299	291	63	56	129	11	30	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	a0002	299	3	0	0	3	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	a0003	299	2	2	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	a0004	94	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	a0005	94	1	0	1	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	a0006	208	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	a0007	139	1	1	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	a0008	299	1	1	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	a0009	94	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	a0010	83	1	1	0	0	0	0	copy fasta	RGN	chrX	47073443	47098313
RGN_chrX_47073443_47098313	0/0	a0011	31	1	0	0	1	0	0	copy fasta	RGN	chrX	47073443	47098313
RGP1_chr9_35744287_35763585	1/1	a0001	391	416	94	65	198	12	45	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	a0002	391	19	0	1	18	0	0	copy fasta	RGP1	chr9	35744287	35763585
RGP1_chr9_35744287_35763585	0/0	a0003	391	2	0	2	0	0	0	copy fasta	RGP1	chr9	35744287	35763585