JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATL2_chr2_38288954_38382273	0/0	a0006	583	1	0	0	0	0	1	copy fasta	ATL2	chr2	38288954	38382273
ATL2_chr2_38288954_38382273	0/0	a0007	583	1	0	1	0	0	0	copy fasta	ATL2	chr2	38288954	38382273
ATL3_chr11_63619087_63676376	1/1	a0001	541	240	81	56	57	10	34	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	a0002	541	1	0	0	1	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATL3_chr11_63619087_63676376	0/0	a0003	541	1	1	0	0	0	0	copy fasta	ATL3	chr11	63619087	63676376
ATMIN_chr16_81030842_81052350	1/1	a0001	823	280	72	55	117	9	25	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	a0002	823	66	7	9	44	1	5	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	a0003	823	13	0	0	13	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	a0004	822	12	4	1	7	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	a0005	823	9	5	1	3	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	a0006	823	4	0	0	4	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	a0007	823	2	0	0	2	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	a0008	823	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	a0009	823	1	0	0	1	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	a0010	823	1	0	1	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	a0011	823	1	0	0	0	0	1	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	a0012	823	1	0	0	0	0	1	copy fasta	ATMIN	chr16	81030842	81052350
ATMIN_chr16_81030842_81052350	0/0	a0013	823	1	0	1	0	0	0	copy fasta	ATMIN	chr16	81030842	81052350
ATM_chr11_108218067_108374102	1/1	a0001	3056	211	33	40	105	10	21	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0002	3056	30	27	3	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0003	3056	12	0	4	2	3	3	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0004	3056	11	10	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0005	3056	9	0	0	6	0	3	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0006	3056	6	6	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0007	3056	4	3	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0008	3056	3	3	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0009	3056	3	2	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0010	3056	2	0	1	0	1	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0011	3056	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0012	3056	1	0	0	0	0	1	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0013	3056	1	0	0	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0014	3056	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0015	3056	1	0	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0016	3056	1	0	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0017	3056	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0018	3056	1	0	1	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0019	3056	1	0	0	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0020	3056	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0021	3056	1	0	0	1	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0022	3056	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATM_chr11_108218067_108374102	0/0	a0023	3056	1	1	0	0	0	0	copy fasta	ATM	chr11	108218067	108374102
ATN1_chr12_6922959_6947321	1/0	a0001	1190	96	10	26	36	7	16	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0002	1185	48	1	3	37	3	4	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0003	1188	48	37	6	5	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0004	1187	33	21	2	4	0	6	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0005	1192	30	0	2	26	0	2	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0006	1191	28	2	8	14	1	3	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0007	1193	27	1	1	23	0	2	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0008	1189	20	8	3	1	0	8	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/1	a0009	1183	17	1	5	4	3	3	copy fasta	ATN1	chr12	6922959	6947321