JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RGPD4_chr2_107821892_107897544	0/0	a0026	349	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0027	369	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0028	1758	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0029	1758	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0030	1758	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0031	1758	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0032	1758	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0033	1758	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0034	1758	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0035	1758	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0036	1758	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0037	1758	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0038	1758	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0039	1758	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0040	565	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0041	1758	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0042	1758	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0043	1758	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0044	1758	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0045	1758	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0046	1597	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0047	1758	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0048	1758	1	1	0	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0049	1758	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0050	1758	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0051	1758	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0052	1758	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0053	1758	1	0	0	1	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0054	1758	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0055	1758	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0056	1758	1	0	0	0	1	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0057	1758	1	0	1	0	0	0	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0058	1758	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD4_chr2_107821892_107897544	0/0	a0059	1758	1	0	0	0	0	1	copy fasta	RGPD4	chr2	107821892	107897544
RGPD5_chr2_109789305_109862705	0/0	a0001	1765	11	7	1	2	1	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0002	1765	6	0	2	1	3	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0003	1765	5	0	0	3	2	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0004	1765	3	3	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0005	1765	2	2	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0006	1765	1	0	0	0	1	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0007	633	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0008	1765	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0009	1765	1	0	1	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0010	1765	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0011	1765	1	0	0	0	1	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0012	1765	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0013	1765	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0014	1765	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0015	1765	1	1	0	0	0	0	copy fasta	RGPD5	chr2	109789305	109862705
RGPD5_chr2_109789305_109862705	0/0	a0016	1765	1	0	0	1	0	0	copy fasta	RGPD5	chr2	109789305	109862705