JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RGS10_chr10_119494817_119547719	0/0	a0003	181	1	0	0	0	1	0	copy fasta	RGS10	chr10	119494817	119547719
RGS11_chr16_263307_280944	1/1	a0001	467	270	33	54	128	15	38	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0002	467	83	4	14	55	2	8	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0003	467	50	44	2	3	0	1	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0004	467	23	0	1	22	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0005	467	7	1	2	3	0	1	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0006	467	4	4	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0007	467	3	3	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0008	467	3	0	3	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0009	467	2	2	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0010	467	2	1	1	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0011	467	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0012	467	1	0	0	1	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0013	467	1	0	0	1	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0014	467	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0015	467	1	0	0	0	1	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0016	467	1	0	1	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0017	467	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0018	467	1	0	0	1	0	0	copy fasta	RGS11	chr16	263307	280944
RGS11_chr16_263307_280944	0/0	a0019	467	1	1	0	0	0	0	copy fasta	RGS11	chr16	263307	280944
RGS12_chr4_3288021_3444913	1/1	a0001	1447	224	51	60	70	9	32	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0002	1447	19	4	4	9	0	2	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0003	1447	15	13	2	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0004	1447	14	6	1	7	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0005	1447	12	10	2	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0006	1447	7	1	1	2	0	3	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0007	1447	4	0	0	4	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0008	1447	2	2	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0009	1447	2	2	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0010	1447	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0011	1447	1	0	1	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0012	1447	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0013	1447	1	0	1	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0014	1447	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0015	1447	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0016	1447	1	0	0	1	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0017	1447	1	0	0	0	0	1	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0018	1447	1	0	0	1	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0019	1447	1	0	0	0	1	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0020	1447	1	1	0	0	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0021	1447	1	0	0	1	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS12_chr4_3288021_3444913	0/0	a0022	1447	1	0	0	1	0	0	copy fasta	RGS12	chr4	3288021	3444913
RGS13_chr1_192631147_192665311	1/1	a0001	159	395	83	61	191	14	44	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	a0002	159	13	0	6	7	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	a0003	159	9	9	0	0	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	a0004	159	2	2	0	0	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS13_chr1_192631147_192665311	0/0	a0005	159	1	0	1	0	0	0	copy fasta	RGS13	chr1	192631147	192665311
RGS14_chr5_177352924_177377596	1/1	a0001	566	403	89	79	170	18	45	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	a0002	566	6	5	1	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	a0003	566	2	2	0	0	0	0	copy fasta	RGS14	chr5	177352924	177377596