JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RGS14_chr5_177352924_177377596	0/0	a0004	566	2	0	0	2	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	a0005	566	1	1	0	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	a0006	566	1	0	0	0	0	1	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	a0007	566	1	1	0	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	a0008	566	1	1	0	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS14_chr5_177352924_177377596	0/0	a0009	566	1	1	0	0	0	0	copy fasta	RGS14	chr5	177352924	177377596
RGS16_chr1_182593623_182609389	0/1	a0001	202	427	79	76	210	16	45	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	a0002	202	9	7	2	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	1/0	a0003	202	5	4	0	0	0	0	copy fasta	RGS16	chr1	182593623	182609389
RGS16_chr1_182593623_182609389	0/0	a0004	202	1	0	0	0	0	1	copy fasta	RGS16	chr1	182593623	182609389
RGS17_chr6_152999459_153136282	1/1	a0001	210	337	90	68	129	12	36	copy fasta	RGS17	chr6	152999459	153136282
RGS17_chr6_152999459_153136282	0/0	a0002	210	1	0	0	1	0	0	copy fasta	RGS17	chr6	152999459	153136282
RGS18_chr1_192153462_192190815	1/1	a0001	235	330	66	54	163	10	35	copy fasta	RGS18	chr1	192153462	192190815
RGS18_chr1_192153462_192190815	0/0	a0002	235	5	0	0	5	0	0	copy fasta	RGS18	chr1	192153462	192190815
RGS18_chr1_192153462_192190815	0/0	a0003	235	1	0	0	0	0	1	copy fasta	RGS18	chr1	192153462	192190815
RGS19_chr20_64068181_64084518	1/1	a0001	217	388	92	77	153	16	48	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	a0002	217	1	0	1	0	0	0	copy fasta	RGS19	chr20	64068181	64084518
RGS19_chr20_64068181_64084518	0/0	a0003	217	1	0	0	1	0	0	copy fasta	RGS19	chr20	64068181	64084518
RGS1_chr1_192570773_192585024	1/1	a0001	209	490	96	88	244	17	43	copy fasta	RGS1	chr1	192570773	192585024
RGS1_chr1_192570773_192585024	0/0	a0002	209	1	0	0	0	1	0	copy fasta	RGS1	chr1	192570773	192585024
RGS1_chr1_192570773_192585024	0/0	a0003	209	1	0	0	0	0	1	copy fasta	RGS1	chr1	192570773	192585024
RGS20_chr8_53846795_53964303	1/1	a0001	388	258	76	52	100	4	24	copy fasta	RGS20	chr8	53846795	53964303
RGS21_chr1_192311992_192372285	1/1	a0001	152	297	85	54	112	4	40	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	a0002	152	2	0	0	0	2	0	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	a0003	152	2	0	0	2	0	0	copy fasta	RGS21	chr1	192311992	192372285
RGS21_chr1_192311992_192372285	0/0	a0004	152	1	1	0	0	0	0	copy fasta	RGS21	chr1	192311992	192372285
RGS22_chr8_99955936_100111049	0/0	a0000	0	2	0	0	2	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	1/1	a0001	1264	249	57	49	103	8	30	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0002	1264	24	1	1	19	0	3	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0003	1264	15	15	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0004	1264	3	0	0	3	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0005	1264	3	0	1	2	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0006	1264	3	3	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0007	1264	2	0	0	2	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0008	1264	1	1	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0009	1264	1	0	0	0	0	1	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0010	1264	1	1	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0011	1264	1	1	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0012	1264	1	1	0	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0013	1264	1	0	1	0	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0014	1264	1	0	0	1	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0015	1264	1	0	0	1	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS22_chr8_99955936_100111049	0/0	a0016	1264	1	0	0	1	0	0	copy fasta	RGS22	chr8	99955936	100111049
RGS2_chr1_192804039_192817275	1/1	a0001	211	427	94	71	200	18	42	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	a0002	211	1	1	0	0	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	a0003	211	1	0	1	0	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS2_chr1_192804039_192817275	0/0	a0004	211	1	1	0	0	0	0	copy fasta	RGS2	chr1	192804039	192817275
RGS3_chr9_113458727_113602738	1/1	a0001	1086	132	41	30	39	5	15	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	a0002	1086	31	19	8	0	2	2	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	a0003	1086	1	1	0	0	0	0	copy fasta	RGS3	chr9	113458727	113602738