JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RGS3_chr9_113458727_113602738	0/0	a0004	1086	1	0	0	1	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	a0005	1086	1	0	0	0	0	1	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	a0006	1086	1	0	0	0	1	0	copy fasta	RGS3	chr9	113458727	113602738
RGS3_chr9_113458727_113602738	0/0	a0007	1086	1	1	0	0	0	0	copy fasta	RGS3	chr9	113458727	113602738
RGS4_chr1_163064361_163081802	1/1	a0001	205	444	94	79	204	16	49	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	a0002	205	2	0	0	1	0	1	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	a0003	205	1	1	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	a0004	102	1	0	0	1	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	a0005	205	1	1	0	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS4_chr1_163064361_163081802	0/0	a0006	205	1	0	1	0	0	0	copy fasta	RGS4	chr1	163064361	163081802
RGS5_chr1_163137299_163207916	1/1	a0001	181	321	85	60	118	14	42	copy fasta	RGS5	chr1	163137299	163207916
RGS5_chr1_163137299_163207916	0/0	a0002	181	1	1	0	0	0	0	copy fasta	RGS5	chr1	163137299	163207916
RGS6_chr14_71927429_72571530	0/0	a0001	490	130	72	30	18	2	8	copy fasta	RGS6	chr14	71927429	72571530
RGS7BP_chr5_64501015_64617319	0/1	a0001	257	195	65	46	52	6	25	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	1/0	a0002	257	83	19	13	37	0	13	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	a0003	257	1	0	1	0	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7BP_chr5_64501015_64617319	0/0	a0004	257	1	0	0	1	0	0	copy fasta	RGS7BP	chr5	64501015	64617319
RGS7_chr1_240770514_241362205	0/0	a0001	495	112	68	20	10	4	10	copy fasta	RGS7	chr1	240770514	241362205
RGS8_chr1_182636818_182689587	1/1	a0001	180	297	91	50	120	8	26	copy fasta	RGS8	chr1	182636818	182689587
RGS8_chr1_182636818_182689587	0/0	a0002	180	3	3	0	0	0	0	copy fasta	RGS8	chr1	182636818	182689587
RGS9BP_chr19_32670848_32683300	1/0	a0001	235	257	57	32	137	9	21	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/1	a0002	235	157	39	33	56	6	22	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	a0003	235	28	0	3	21	1	3	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9BP_chr19_32670848_32683300	0/0	a0004	235	2	0	2	0	0	0	copy fasta	RGS9BP	chr19	32670848	32683300
RGS9_chr17_65132370_65232703	1/1	a0001	674	209	85	48	45	8	21	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	a0002	674	6	0	0	4	0	2	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	a0003	674	2	2	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	a0004	674	1	1	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	a0005	674	1	1	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	a0006	674	1	0	0	0	0	1	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	a0007	674	1	0	0	1	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGS9_chr17_65132370_65232703	0/0	a0008	674	1	1	0	0	0	0	copy fasta	RGS9	chr17	65132370	65232703
RGSL1_chr1_182445146_182565597	1/1	a0001	1076	170	53	36	54	10	15	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0002	1076	76	8	12	46	2	8	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0003	1076	68	12	10	40	1	5	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0004	1076	5	4	1	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0005	1076	3	0	0	0	1	2	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0006	1076	2	2	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0007	1076	2	0	0	2	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0008	1076	2	2	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0009	1076	2	2	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0010	1076	1	1	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0011	1076	1	0	0	1	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0012	1076	1	1	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0013	1076	1	0	0	1	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0014	1076	1	0	1	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0015	1076	1	0	0	1	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0016	1076	1	0	0	1	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RGSL1_chr1_182445146_182565597	0/0	a0017	1076	1	1	0	0	0	0	copy fasta	RGSL1	chr1	182445146	182565597
RHAG_chr6_49600175_49641839	1/1	a0001	409	366	81	72	158	18	35	copy fasta	RHAG	chr6	49600175	49641839