JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RHAG_chr6_49600175_49641839	0/0	a0002	409	27	8	1	11	0	7	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	a0003	409	3	3	0	0	0	0	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	a0004	5	1	1	0	0	0	0	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	a0005	409	1	1	0	0	0	0	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	a0006	409	1	0	1	0	0	0	copy fasta	RHAG	chr6	49600175	49641839
RHAG_chr6_49600175_49641839	0/0	a0007	409	1	0	0	1	0	0	copy fasta	RHAG	chr6	49600175	49641839
RHBDD1_chr2_226831054_227004210	1/1	a0001	315	247	58	38	117	8	24	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	a0002	315	12	10	0	0	0	2	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	a0003	315	4	4	0	0	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD1_chr2_226831054_227004210	0/0	a0004	315	1	0	0	1	0	0	copy fasta	RHBDD1	chr2	226831054	227004210
RHBDD2_chr7_75874034_75893926	1/1	a0001	364	390	98	70	156	16	48	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	a0002	364	2	0	0	2	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	a0003	200	1	0	0	1	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD2_chr7_75874034_75893926	0/0	a0004	364	1	0	0	1	0	0	copy fasta	RHBDD2	chr7	75874034	75893926
RHBDD3_chr22_29254872_29272981	1/1	a0001	386	436	87	77	207	17	46	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	a0002	386	5	5	0	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	a0003	386	3	3	0	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	a0004	386	2	0	2	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	a0005	386	1	0	0	1	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	a0006	386	1	0	0	1	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	a0007	386	1	0	0	1	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	a0008	386	1	0	1	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	a0009	386	1	1	0	0	0	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDD3_chr22_29254872_29272981	0/0	a0010	386	1	0	0	0	1	0	copy fasta	RHBDD3	chr22	29254872	29272981
RHBDF1_chr16_53059_77631	1/1	a0001	855	365	89	72	138	18	46	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	a0002	855	14	0	0	14	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	a0003	855	6	3	3	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	a0004	855	3	0	0	3	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	a0005	855	2	2	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	a0006	855	2	2	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	a0007	855	1	0	0	1	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	a0008	855	1	1	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	a0009	855	1	0	0	1	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	a0010	618	1	0	0	1	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	a0011	855	1	0	1	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF1_chr16_53059_77631	0/0	a0012	855	1	1	0	0	0	0	copy fasta	RHBDF1	chr16	53059	77631
RHBDF2_chr17_76465896_76506423	0/1	a0001	827	242	34	53	104	11	39	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	1/0	a0002	827	82	45	10	21	0	5	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	a0003	827	12	0	1	11	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	a0004	827	6	2	2	0	1	1	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	a0005	827	5	4	1	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	a0006	827	4	0	3	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	a0007	827	2	0	0	2	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	a0008	827	2	0	1	0	0	1	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	a0009	827	2	0	0	0	2	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	a0010	827	1	1	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	a0011	67	1	1	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	a0012	827	1	0	0	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	a0013	288	1	0	1	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	a0014	827	1	1	0	0	0	0	copy fasta	RHBDF2	chr17	76465896	76506423