JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RHBDF2_chr17_76465896_76506423	0/0	a0015	827	1	0	0	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDF2_chr17_76465896_76506423	0/0	a0016	827	1	0	0	1	0	0	copy fasta	RHBDF2	chr17	76465896	76506423
RHBDL1_chr16_670671_683268	1/1	a0001	373	370	96	70	144	10	48	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	a0002	373	1	0	0	1	0	0	copy fasta	RHBDL1	chr16	670671	683268
RHBDL1_chr16_670671_683268	0/0	a0003	373	1	0	0	1	0	0	copy fasta	RHBDL1	chr16	670671	683268
RHBDL2_chr1_38880807_38946830	1/1	a0001	303	270	70	43	116	9	30	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	a0002	303	87	14	17	43	3	10	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	a0003	303	6	6	0	0	0	0	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL2_chr1_38880807_38946830	0/0	a0004	303	1	0	0	1	0	0	copy fasta	RHBDL2	chr1	38880807	38946830
RHBDL3_chr17_32260832_32329659	1/1	a0001	404	210	76	58	40	10	24	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	a0002	404	95	14	8	51	4	18	copy fasta	RHBDL3	chr17	32260832	32329659
RHBDL3_chr17_32260832_32329659	0/0	a0003	404	1	0	0	1	0	0	copy fasta	RHBDL3	chr17	32260832	32329659
RHBG_chr1_156364211_156390219	0/0	a0001	458	113	18	15	73	3	4	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/1	a0002	441	105	13	23	55	3	10	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0003	441	66	3	21	23	4	15	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0004	458	59	16	5	25	3	10	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0005	441	37	19	9	5	1	3	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0006	458	28	22	1	4	0	1	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0007	441	9	2	2	3	2	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0008	441	8	0	2	5	0	1	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0009	458	3	0	0	3	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0010	441	1	0	0	1	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0011	441	1	0	0	0	0	1	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0012	441	1	1	0	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0013	441	1	0	1	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0014	441	1	0	1	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0015	441	1	0	0	0	0	1	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0016	458	1	1	0	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0017	441	1	1	0	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	0/0	a0018	458	1	0	0	1	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHBG_chr1_156364211_156390219	1/0	a0019	458	1	0	0	0	0	0	copy fasta	RHBG	chr1	156364211	156390219
RHCE_chr1_25357249_25425825	0/1	a0001	417	130	3	31	73	5	17	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0002	417	71	5	8	50	3	5	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0003	417	43	13	13	3	6	8	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	1/0	a0004	417	26	18	2	5	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0005	417	18	15	3	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0006	417	8	8	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0007	417	6	6	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0008	417	5	4	1	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0009	417	4	3	0	0	0	1	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0010	417	3	0	0	3	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0011	417	2	0	0	2	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0012	417	2	0	0	2	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0013	417	2	1	1	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0014	417	2	2	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0015	417	2	1	1	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0016	417	2	1	1	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0017	417	2	2	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0018	417	1	0	0	0	0	1	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0019	417	1	0	1	0	0	0	copy fasta	RHCE	chr1	25357249	25425825