JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RHCE_chr1_25357249_25425825	0/0	a0020	417	1	1	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0021	417	1	1	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0022	417	1	1	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCE_chr1_25357249_25425825	0/0	a0023	417	1	1	0	0	0	0	copy fasta	RHCE	chr1	25357249	25425825
RHCG_chr15_89466407_89501583	1/1	a0001	479	323	89	62	132	9	29	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	a0002	479	20	2	8	4	2	4	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	a0003	479	7	0	4	2	1	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	a0004	479	4	0	0	4	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	a0005	479	1	0	0	0	0	1	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	a0006	479	1	0	1	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	a0007	479	1	1	0	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	a0008	479	1	1	0	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	a0009	479	1	1	0	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHCG_chr15_89466407_89501583	0/0	a0010	479	1	0	1	0	0	0	copy fasta	RHCG	chr15	89466407	89501583
RHD_chr1_25267509_25335445	0/1	a0001	417	186	28	36	94	6	21	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	1/0	a0002	417	12	10	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	a0003	417	4	4	0	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	a0004	417	4	3	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	a0005	417	3	3	0	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	a0006	417	2	0	0	2	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	a0007	417	1	0	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	a0008	268	1	0	1	0	0	0	copy fasta	RHD	chr1	25267509	25335445
RHD_chr1_25267509_25335445	0/0	a0009	417	1	0	0	0	0	1	copy fasta	RHD	chr1	25267509	25335445
RHEBL1_chr12_49059676_49074979	1/1	a0001	183	374	90	68	160	14	40	copy fasta	RHEBL1	chr12	49059676	49074979
RHEB_chr7_151461012_151524895	1/1	a0001	184	364	86	70	158	14	34	copy fasta	RHEB	chr7	151461012	151524895
RHEX_chr1_206048173_206107449	1/1	a0001	172	313	88	55	124	12	32	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	a0002	171	14	0	9	5	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	a0003	172	5	5	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	a0004	172	1	1	0	0	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHEX_chr1_206048173_206107449	0/0	a0005	172	1	0	0	1	0	0	copy fasta	RHEX	chr1	206048173	206107449
RHNO1_chr12_2872223_2894524	1/1	a0001	238	423	93	76	198	14	40	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	a0002	238	2	0	0	0	0	2	copy fasta	RHNO1	chr12	2872223	2894524
RHNO1_chr12_2872223_2894524	0/0	a0003	238	1	1	0	0	0	0	copy fasta	RHNO1	chr12	2872223	2894524
RHOA_chr3_49354145_49416976	1/1	a0001	193	264	90	52	62	18	40	copy fasta	RHOA	chr3	49354145	49416976
RHOBTB1_chr10_60864438_60949185	1/1	a0001	696	311	89	49	128	16	27	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	a0002	696	2	1	1	0	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	a0003	696	2	0	0	2	0	0	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB1_chr10_60864438_60949185	0/0	a0004	696	1	0	0	0	0	1	copy fasta	RHOBTB1	chr10	60864438	60949185
RHOBTB2_chr8_22994548_23025199	1/1	a0001	727	355	86	68	139	16	44	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	a0002	727	2	0	2	0	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB2_chr8_22994548_23025199	0/0	a0003	727	1	0	0	1	0	0	copy fasta	RHOBTB2	chr8	22994548	23025199
RHOBTB3_chr5_95726336_95801361	1/1	a0001	611	163	48	41	45	5	22	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	a0002	611	129	38	18	56	2	15	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	a0003	611	5	0	3	0	1	1	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	a0004	611	3	0	0	3	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	a0005	611	2	0	0	0	0	2	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	a0006	611	1	0	1	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOBTB3_chr5_95726336_95801361	0/0	a0007	611	1	0	1	0	0	0	copy fasta	RHOBTB3	chr5	95726336	95801361
RHOB_chr2_20442074_20454440	1/1	a0001	196	368	96	74	144	12	40	copy fasta	RHOB	chr2	20442074	20454440
RHOC_chr1_112696131_112712127	1/1	a0001	193	422	98	80	186	14	42	copy fasta	RHOC	chr1	112696131	112712127