JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RHOC_chr1_112696131_112712127	0/0	a0002	193	5	0	0	5	0	0	copy fasta	RHOC	chr1	112696131	112712127
RHOC_chr1_112696131_112712127	0/0	a0003	193	1	0	0	1	0	0	copy fasta	RHOC	chr1	112696131	112712127
RHOD_chr11_67051847_67077017	1/1	a0001	210	387	96	62	174	13	40	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	a0002	210	3	0	2	0	1	0	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	a0003	210	2	0	2	0	0	0	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	a0004	210	1	0	1	0	0	0	copy fasta	RHOD	chr11	67051847	67077017
RHOD_chr11_67051847_67077017	0/0	a0005	210	1	0	1	0	0	0	copy fasta	RHOD	chr11	67051847	67077017
RHOF_chr12_121772754_121798688	1/1	a0001	211	367	90	64	155	18	38	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	a0002	211	11	8	3	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	a0003	211	7	0	0	3	0	4	copy fasta	RHOF	chr12	121772754	121798688
RHOF_chr12_121772754_121798688	0/0	a0004	211	1	0	1	0	0	0	copy fasta	RHOF	chr12	121772754	121798688
RHOG_chr11_3821978_3845959	1/1	a0001	191	468	98	80	224	16	48	copy fasta	RHOG	chr11	3821978	3845959
RHOH_chr4_40192031_40251967	1/1	a0001	191	315	32	64	181	6	30	copy fasta	RHOH	chr4	40192031	40251967
RHOH_chr4_40192031_40251967	0/0	a0002	191	1	0	0	1	0	0	copy fasta	RHOH	chr4	40192031	40251967
RHOJ_chr14_63199443_63298508	1/1	a0001	214	320	96	48	150	8	16	copy fasta	RHOJ	chr14	63199443	63298508
RHOQ_chr2_46537490_46589688	1/1	a0001	205	328	98	76	108	12	32	copy fasta	RHOQ	chr2	46537490	46589688
RHOQ_chr2_46537490_46589688	0/0	a0002	205	4	0	0	4	0	0	copy fasta	RHOQ	chr2	46537490	46589688
RHOT1_chr17_32137502_32230727	1/1	a0001	659	283	91	42	114	8	26	copy fasta	RHOT1	chr17	32137502	32230727
RHOT1_chr17_32137502_32230727	0/0	a0002	659	1	1	0	0	0	0	copy fasta	RHOT1	chr17	32137502	32230727
RHOT2_chr16_663132_679171	0/0	a0001	618	133	3	20	86	4	20	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0002	618	129	57	16	47	1	8	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	1/1	a0003	618	56	9	24	0	4	17	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0004	618	27	13	6	7	0	1	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0005	618	10	9	1	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0006	618	5	0	0	5	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0007	618	3	3	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0008	618	2	2	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0009	78	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0010	618	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0011	618	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0012	618	1	0	0	0	0	1	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0013	618	1	0	1	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0014	618	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0015	618	1	0	1	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0016	618	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0017	618	1	1	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0018	618	1	0	0	0	0	1	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0019	618	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0020	618	1	0	1	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0021	618	1	0	0	1	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0022	618	1	1	0	0	0	0	copy fasta	RHOT2	chr16	663132	679171
RHOT2_chr16_663132_679171	0/0	a0023	618	1	0	0	0	1	0	copy fasta	RHOT2	chr16	663132	679171
RHOU_chr1_228730479_228751664	1/1	a0001	258	380	92	72	164	10	40	copy fasta	RHOU	chr1	228730479	228751664
RHOV_chr15_40867214_40879234	1/1	a0001	236	361	91	56	164	14	34	copy fasta	RHOV	chr15	40867214	40879234
RHOV_chr15_40867214_40879234	0/0	a0002	236	1	1	0	0	0	0	copy fasta	RHOV	chr15	40867214	40879234
RHOXF1_chrX_120104051_120120913	1/1	a0001	184	309	78	52	137	9	31	copy fasta	RHOXF1	chrX	120104051	120120913
RHOXF1_chrX_120104051_120120913	0/0	a0002	184	10	0	0	9	0	1	copy fasta	RHOXF1	chrX	120104051	120120913
RHOXF1_chrX_120104051_120120913	0/0	a0003	46	1	0	0	1	0	0	copy fasta	RHOXF1	chrX	120104051	120120913
RHOXF2B_chrX_120067264_120082690	0/0	a0000	0	4	0	0	4	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0001	288	64	15	11	33	2	3	copy fasta	RHOXF2B	chrX	120067264	120082690