JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
RHOXF2B_chrX_120067264_120082690	0/0	a0002	288	62	10	12	28	5	7	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0003	288	46	6	8	22	2	8	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0004	288	16	11	4	0	0	1	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0005	288	9	0	0	9	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0006	288	3	3	0	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0007	10	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0008	59	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0009	288	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0010	288	1	1	0	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0011	270	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0012	275	1	0	0	1	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0013	288	1	1	0	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0014	182	1	0	1	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2B_chrX_120067264_120082690	0/0	a0015	289	1	1	0	0	0	0	copy fasta	RHOXF2B	chrX	120067264	120082690
RHOXF2_chrX_120153613_120170630	0/0	a0000	0	2	0	1	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	a0001	288	123	31	21	46	8	17	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	a0002	288	23	14	3	4	0	2	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	a0003	288	10	0	1	5	0	4	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	a0004	288	8	3	2	0	0	3	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	a0005	288	3	0	3	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	a0006	288	2	0	2	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	a0007	288	2	1	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	a0008	288	2	1	1	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	a0009	231	1	0	0	1	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHOXF2_chrX_120153613_120170630	0/0	a0010	288	1	1	0	0	0	0	copy fasta	RHOXF2	chrX	120153613	120170630
RHO_chr3_129523639_129540344	1/1	a0001	348	401	63	68	206	14	48	copy fasta	RHO	chr3	129523639	129540344
RHO_chr3_129523639_129540344	0/0	a0002	348	3	3	0	0	0	0	copy fasta	RHO	chr3	129523639	129540344
RHPN1_chr8_143363876_143389221	1/1	a0001	670	413	94	74	191	12	40	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	a0002	670	3	0	2	0	0	1	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	a0003	670	2	2	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	a0004	670	1	0	0	1	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	a0005	670	1	0	1	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	a0006	670	1	1	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	a0007	670	1	0	1	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	a0008	670	1	1	0	0	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	a0009	670	1	0	0	0	0	1	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	a0010	670	1	0	0	1	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN1_chr8_143363876_143389221	0/0	a0011	670	1	0	0	1	0	0	copy fasta	RHPN1	chr8	143363876	143389221
RHPN2_chr19_32973592_33069888	1/1	a0001	686	247	51	49	104	11	30	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	a0002	686	34	3	4	19	3	5	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	a0003	686	10	0	1	3	1	5	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	a0004	686	7	7	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	a0005	686	7	7	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	a0006	686	7	7	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	a0007	686	6	6	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	a0008	686	2	0	0	2	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	a0009	686	2	0	0	0	1	1	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	a0010	686	1	0	0	0	0	1	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	a0011	686	1	0	0	1	0	0	copy fasta	RHPN2	chr19	32973592	33069888
RHPN2_chr19_32973592_33069888	0/0	a0012	686	1	1	0	0	0	0	copy fasta	RHPN2	chr19	32973592	33069888