JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	ahapid	alen	total	AFR	AMR	EAS	EUR	SAS	aseq	genename	chr	start	end
ATN1_chr12_6922959_6947321	0/0	a0010	1186	16	3	2	11	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0011	1184	10	5	0	4	0	1	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0012	1194	9	1	0	8	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0013	1195	5	0	1	3	0	1	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0014	1182	4	0	0	4	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0015	1187	3	0	3	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0016	1185	2	0	2	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0017	1190	2	0	0	0	0	2	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0018	1193	2	0	0	2	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0019	1197	2	0	0	2	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0020	1193	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0021	1194	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0022	1190	1	0	0	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0023	1178	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0024	1181	1	0	0	0	0	1	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0025	1186	1	0	1	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0026	1187	1	0	0	0	0	1	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0027	1196	1	0	0	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0028	1198	1	0	0	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0029	1200	1	0	0	1	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0030	1183	1	0	1	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATN1_chr12_6922959_6947321	0/0	a0031	1187	1	1	0	0	0	0	copy fasta	ATN1	chr12	6922959	6947321
ATOH1_chr4_93823753_93835964	1/1	a0001	354	451	88	84	214	17	46	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	a0002	354	2	1	0	0	1	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	a0003	354	2	2	0	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	a0004	354	1	0	0	1	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	a0005	354	1	0	0	1	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH1_chr4_93823753_93835964	0/0	a0006	354	1	1	0	0	0	0	copy fasta	ATOH1	chr4	93823753	93835964
ATOH7_chr10_68225595_68237113	1/1	a0001	152	384	95	70	159	18	40	copy fasta	ATOH7	chr10	68225595	68237113
ATOH7_chr10_68225595_68237113	0/0	a0002	152	1	1	0	0	0	0	copy fasta	ATOH7	chr10	68225595	68237113
ATOH7_chr10_68225595_68237113	0/0	a0003	152	1	0	0	1	0	0	copy fasta	ATOH7	chr10	68225595	68237113
ATOH8_chr2_85748991_85796383	0/1	a0001	321	155	7	35	89	6	17	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	1/0	a0002	321	137	41	23	41	12	19	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	a0003	321	77	39	4	30	0	4	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	a0004	320	6	6	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	a0005	321	2	0	0	2	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOH8_chr2_85748991_85796383	0/0	a0006	321	1	1	0	0	0	0	copy fasta	ATOH8	chr2	85748991	85796383
ATOSA_chr15_52576321_52684388	0/1	a0001	1076	200	39	23	121	1	15	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	a0002	1076	93	21	25	30	3	14	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	a0003	1076	26	11	6	0	2	7	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	a0004	1076	14	8	2	2	0	2	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	1/0	a0005	1076	13	6	0	6	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	a0006	1076	8	8	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	a0007	1076	2	2	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	a0008	1076	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	a0009	1076	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	a0010	1076	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	a0011	1076	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	a0012	1076	1	1	0	0	0	0	copy fasta	ATOSA	chr15	52576321	52684388
ATOSA_chr15_52576321_52684388	0/0	a0013	1076	1	0	0	1	0	0	copy fasta	ATOSA	chr15	52576321	52684388